View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14638_high_11 (Length: 396)
Name: NF14638_high_11
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 27 - 377
Target Start/End: Original strand, 38488011 - 38488361
Alignment:
| Q |
27 |
gagacaagttggctgtccccatttcaactcttttagcaagagtgatggtgacaaaattgatatacctataaaactttcagctgtgttaatttgataaaca |
126 |
Q |
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| T |
38488011 |
gagacaagttgactgtccccatttcaactcttttagcaagagtgatggtgacaaaattgatatacctataaaactttcagctgtgttaatttgataaaca |
38488110 |
T |
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| Q |
127 |
aaaattggacaactttgacaacaacaatcttagtgattaacacagttcaaatatttggtcaattaacagtcaataccatgtataaagcccaataatcatt |
226 |
Q |
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| T |
38488111 |
aaaattggacaactttgacaacaacaatcttagtgattaacatagttcaaatatttggtcaattaacagtcaataccatgtataaagcccaataatcatt |
38488210 |
T |
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| Q |
227 |
aattaatcattattgaccacaaatttggatgagattaaccacaattttcagatgttcaattcgaacactctgaaaattatggttaatcaccttctgaatt |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38488211 |
aattaatcattattgaccacaaatttggatgagattaaccacaattttcaggtgttcaattcgaacactctgaaaattatggttaatcaccttctcaatt |
38488310 |
T |
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| Q |
327 |
acattgatggttgtcgaattcgacgcttctattgatggtgacagactaact |
377 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38488311 |
acatcgatggttgtcgaattcgaagcttctattgatggtgacagactaact |
38488361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 30044822 - 30044770
Alignment:
| Q |
123 |
aacaaaaattggacaactttgacaacaacaatcttagtgattaacacagttca |
175 |
Q |
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| T |
30044822 |
aacaaaaattggacaacttttgcgacaacaatataagtggttaacacagttca |
30044770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 4504445 - 4504497
Alignment:
| Q |
127 |
aaaattggacaactttgacaacaacaatcttagtgattaacacagttcaaata |
179 |
Q |
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|||||| ||||||||| || ||||||||| ||||||||||||| |||||||| |
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| T |
4504445 |
aaaattagacaacttttacgacaacaatcgaagtgattaacacaattcaaata |
4504497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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