View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14638_high_16 (Length: 306)
Name: NF14638_high_16
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 49388192 - 49388489
Alignment:
| Q |
8 |
aataagaacttcttcgtgatttgcagttttcaatgtaaagatcggttttcttcgtgagttcagcaaaataagagcttccaatagttgcagcccaggcttt |
107 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49388192 |
aataagaacttcttcatgatttgcagttttcaacgtaaagatcgattttcttcgtgagttcagcaaaataagagcttccaatagttgcagcccaagcttt |
49388291 |
T |
|
| Q |
108 |
gcatacaagccagagttatacagaaaattaagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagcagctttgaaatcactttataac |
207 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
49388292 |
gcatacaagtcagagttatacaggaaattaagaggaaccaaaataaagatacaaagcaacaagtcttcagggagaagcagctttgaaatcactttataac |
49388391 |
T |
|
| Q |
208 |
tcttagtactatttgagttttggttcatattcttcttggcatgatcatattctttgattaggtcatgagggacccgtcatttccaagtttcgcctttg |
305 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
49388392 |
tctcagtactatttgagttttggttcatattcttcttggcatgatcatattctttgattaggtcatgaggaccccgtcatttccaagtttcgtctttg |
49388489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 255
Target Start/End: Complemental strand, 39571633 - 39571515
Alignment:
| Q |
134 |
attaagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagcagctttgaaatcactttataactcttagtactatttgagttttggttc |
233 |
Q |
| |
|
|||||||||||||||| |||||||| || ||| || |||| |||||| |||| |||||||||||||||| |||||| |||||||||||||||| || |
|
|
| T |
39571633 |
attaagaggaaccaaactaaagatatcaaacaataaatcttcagggagcagcaactttgaaatcactttacaactct---tactatttgagttttgattt |
39571537 |
T |
|
| Q |
234 |
atattcttcttggcatgatcat |
255 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39571536 |
atattcttcttggcatgatcat |
39571515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 133 - 245
Target Start/End: Original strand, 2327146 - 2327258
Alignment:
| Q |
133 |
aattaagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagcagctttgaaatcactttataactcttagtactatttgagttttggtt |
232 |
Q |
| |
|
||||||||||||| |||||||||||| || | |||||||| | | ||||||| ||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
2327146 |
aattaagaggaacaaaagtaaagatatgaaacctcaagtcttcaagtagaagcaactttgaaatcattttacaactcttagtactatttgagttttggtt |
2327245 |
T |
|
| Q |
233 |
catattcttcttg |
245 |
Q |
| |
|
| | ||||||||| |
|
|
| T |
2327246 |
cttgttcttcttg |
2327258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 133 - 255
Target Start/End: Complemental strand, 39575640 - 39575521
Alignment:
| Q |
133 |
aattaagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagcagctttgaaatcactttataactcttagtactatttgagttttggtt |
232 |
Q |
| |
|
||||||||||||||||| | |||||| || ||||| ||||| |||||| |||| |||| |||| ||||| |||||||| |||||||||||||| || |
|
|
| T |
39575640 |
aattaagaggaaccaaactgaagatatcaaacaacaggtcttcagggagcagcacttttggaatctctttacaactctta---ctatttgagttttgatt |
39575544 |
T |
|
| Q |
233 |
catattcttcttggcatgatcat |
255 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
39575543 |
tatattcttcttggcatgatcat |
39575521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 9902227 - 9902141
Alignment:
| Q |
128 |
cagaaaattaagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagcagctttgaaatcactttataactcttagt |
214 |
Q |
| |
|
|||| ||| ||||||||||||||||| |||| ||| || |||||||| ||| || | || ||||||||| |||| | |||||||||| |
|
|
| T |
9902227 |
cagacaatcaagaggaaccaaagtaaggatataaaacatcaagtcttcaggaagcaacacctttgaaattacttcacaactcttagt |
9902141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 9841266 - 9841190
Alignment:
| Q |
136 |
taagaggaaccaaagtaaagatacaaagcaacaagtctttagggagaagcagctttgaaatcactttataactctta |
212 |
Q |
| |
|
|||||||||||||||||| || | || ||||||||||| | | || | || |||||||||||||||| |||||||| |
|
|
| T |
9841266 |
taagaggaaccaaagtaaggacatgaaacaacaagtcttcaagaagcaacaactttgaaatcactttacaactctta |
9841190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University