View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14638_high_17 (Length: 302)
Name: NF14638_high_17
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 6627269 - 6627068
Alignment:
| Q |
1 |
atgataaaaattaagttgcagggatatttgatacactattttatgtgcatgtactcaatggaaaactaacatgtctctttttacattgcacggagcaa-- |
98 |
Q |
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| T |
6627269 |
atgataaaaattaagttgcagggatatttgatacactattttatgtgcatgtactcaatggaaacctaacatgtctctttttacattgcacggagcaaaa |
6627170 |
T |
|
| Q |
99 |
---aacagtcatgtaattacatgtcaaattgcacagataaatttcaatacatgaatgatactgtaattacacttagttttgaatctctgtaattacattc |
195 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6627169 |
caaaacagtcatgtaattacatgtcaaattgcagagataaatttcaatacatgaatgatactgtaattacacttagttttgaatctctgtaattatattc |
6627070 |
T |
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| Q |
196 |
aa |
197 |
Q |
| |
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|| |
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| T |
6627069 |
aa |
6627068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 6635068 - 6634867
Alignment:
| Q |
1 |
atgataaaaattaagttgcagggatatttgatacactattttatgtgcatgtactcaatggaaaactaacatgtctctttttacattgcacggagcaa-- |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6635068 |
atgataaaaattaagttgcagggatatttgatacactattttatgtgcatgtactcaatggaaacctaacatgtctctttttacattgcacggagcaaaa |
6634969 |
T |
|
| Q |
99 |
---aacagtcatgtaattacatgtcaaattgcacagataaatttcaatacatgaatgatactgtaattacacttagttttgaatctctgtaattacattc |
195 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6634968 |
caaaacagtcatgtaattacatgtcaaattgcagagataaatttcaatacatgaatgatactgtaattacacttagttttgaatctctgtaattatattc |
6634869 |
T |
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| Q |
196 |
aa |
197 |
Q |
| |
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|| |
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| T |
6634868 |
aa |
6634867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 6626584 - 6626492
Alignment:
| Q |
194 |
tcaacggttaaaaccgagagagtgtcaccggttctaaacgaaccatgatgccatcaatcttcaagttaaagacgtaaaagcaaagttgcatgg |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6626584 |
tcaacggttaaaaccgagagagtgtcaccggttctaaacgaaccatgatgccatcaatcttcaagttaaagacgtaaaagcaaagttgcatgg |
6626492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 6634626 - 6634589
Alignment:
| Q |
238 |
atgatgccatcaatcttcaagttaaagacgtaaaagca |
275 |
Q |
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| T |
6634626 |
atgatgccatcaagcttcaagttaaagacgtaaaagca |
6634589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 6795249 - 6795215
Alignment:
| Q |
238 |
atgatgccatcaatcttcaagttaaagacgtaaaa |
272 |
Q |
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||||||||||||| ||||||||||||||||||||| |
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|
| T |
6795249 |
atgatgccatcaagcttcaagttaaagacgtaaaa |
6795215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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