View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14638_high_19 (Length: 267)
Name: NF14638_high_19
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_high_19 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0240 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 42017902 - 42018168
Alignment:
| Q |
1 |
ctaatattatttctttctctgttctttgtagttgttttggtgtatccatctttctataaatagttttgtgactttcgttattttcctagtacaccttgtg |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || ||||||||||| |
|
|
| T |
42017902 |
ctaatactatttctttctctgttctttgtagttgttttggtgtatccatctttctataaatagttttgtgattttcgttctttttctgatacaccttgtg |
42018001 |
T |
|
| Q |
101 |
ctatgaagaacactttggttgaacaatatattccattttaatctcttcannnnnnnnnnnnnnactttaacaataattgaatatatagtttcgactaatt |
200 |
Q |
| |
|
||||| |||||| ||||||||| |||||||||| |||||| |||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42018002 |
ctatggagaacattttggttgagcaatatattctattttagtctcttcatgttttttttttttactttaacgataattgaatatatagtttcgactaatt |
42018101 |
T |
|
| Q |
201 |
tcctctctctttataggctgtcaatggtggttgcattgtaattagatgcctcacgagactttagtta |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42018102 |
tcctctctctttataggctgtcaatggtggttgcattgtaattagatgcctcacgagactttagtta |
42018168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 28043170 - 28043253
Alignment:
| Q |
65 |
tttgtgactttcgttattttcctagtacaccttgtgctatgaagaacactttggttgaacaatatattccattttaatctcttca |
149 |
Q |
| |
|
||||||||||| ||| ||||||| |||||||||| ||| ||||||||||||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
28043170 |
tttgtgacttt-gttcttttcctgatacaccttgtactaggaagaacactttgattgggtaatatattccattttaacctcttca |
28043253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 25197718 - 25197802
Alignment:
| Q |
65 |
tttgtgactttcgttattttcctagtacaccttgtgctatgaagaacactttggttgaacaatatattccattttaatctcttca |
149 |
Q |
| |
|
||||||||||| ||| ||||||| ||||||||||||||| |||||||| |||| ||| |||||||| ||||||| ||||||| |
|
|
| T |
25197718 |
tttgtgacttttgttcttttcctggtacaccttgtgctaggaagaacattttgattgggtaatatatttcattttagcctcttca |
25197802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 53650343 - 53650282
Alignment:
| Q |
86 |
ctagtacaccttgtgctatgaagaacactttggttgaacaatatattccattttaatctctt |
147 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| ||| | ||||||||||||||| ||||| |
|
|
| T |
53650343 |
ctagtacaccttgtgctaggaagaacgctttgattgtgtactatattccattttaacctctt |
53650282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 45680139 - 45680087
Alignment:
| Q |
89 |
gtacaccttgtgctatgaagaacactttggttgaacaatatattccattttaa |
141 |
Q |
| |
|
||||||||||||||| |||||||| |||| || | ||||||||||||||||| |
|
|
| T |
45680139 |
gtacaccttgtgctaggaagaacattttgatttgataatatattccattttaa |
45680087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 33136027 - 33135943
Alignment:
| Q |
65 |
tttgtgactttcgttattttcctagtacaccttgtgctatgaagaacactttggttgaacaatatattccattttaatctcttca |
149 |
Q |
| |
|
||||||||| | ||| ||||||| ||||||||||||||| || |||| | || |||| |||||||| |||||||||||||||| |
|
|
| T |
33136027 |
tttgtgactcttgttcttttcctggtacaccttgtgctaggaggaactttatgattgagtaatatatttcattttaatctcttca |
33135943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0240 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0240
Description:
Target: scaffold0240; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 11738 - 11838
Alignment:
| Q |
8 |
tatttctttctctgttctttgtagttgttttggtgtatccatctttctataaatagttttgtgactttcgttattttcctagtacaccttgtgctatgaa |
107 |
Q |
| |
|
||||||||||||| || ||||| ||| ||| ||| ||||||||||| |||||||||| |||||||||||| ||||||| | ||| |||||| || ||| |
|
|
| T |
11738 |
tatttctttctctattttttgtttttgctttt-tgtttccatctttctgtaaatagttt-gtgactttcgttcttttcctggaacatcttgtgataggaa |
11835 |
T |
|
| Q |
108 |
gaa |
110 |
Q |
| |
|
||| |
|
|
| T |
11836 |
gaa |
11838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 43797217 - 43797157
Alignment:
| Q |
89 |
gtacaccttgtgctatgaagaacactttggttgaacaatatattccattttaatctcttca |
149 |
Q |
| |
|
||||||||||||||| ||||||||||||| || |||||||||||||||| ||||||| |
|
|
| T |
43797217 |
gtacaccttgtgctaggaagaacactttgatttggtaatatattccattttagcctcttca |
43797157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University