View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14638_high_24 (Length: 243)
Name: NF14638_high_24
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_high_24 |
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| [»] chr7 (5 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 21748256 - 21748383
Alignment:
| Q |
116 |
tgctatccatagtactagttttagtagaatttgctacaacatggtgcttgtaatgtgtctttgactatgattttctaatgatagaacaaggcaaaggcac |
215 |
Q |
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| T |
21748256 |
tgctatcgatagtactagttttagtagaatgtgctacaacatggtgcttgtaatgtgtctttgactatgattttctaatgatagaacaaggcaaagacac |
21748355 |
T |
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| Q |
216 |
tctttaactatgaatttatagattttct |
243 |
Q |
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| T |
21748356 |
tctttaactatgaatttatagattttct |
21748383 |
T |
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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 21771529 - 21771603
Alignment:
| Q |
32 |
aattaggtatctaatcctaa----ttaaaagccaagcaaggaatgaataaaaggagaagccgcatggtaacagag |
102 |
Q |
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| T |
21771529 |
aattaggtatctaatcctaagaaattaaaagccaagcaaggaatgaataaaaggagaagccgcatggaaacagag |
21771603 |
T |
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Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 21784500 - 21784548
Alignment:
| Q |
54 |
aaaagccaagcaaggaatgaataaaaggagaagccgcatggtaacagag |
102 |
Q |
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| T |
21784500 |
aaaagccaagcaaagaatgaataaaaggagaagccgcatggtaacagag |
21784548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 21725490 - 21725536
Alignment:
| Q |
53 |
taaaagccaagcaaggaatgaataaaaggagaagccgcatggtaaca |
99 |
Q |
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| T |
21725490 |
taaacgccaagcaaggaatgaataaaaggagaagccgcatggaaaca |
21725536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 21991326 - 21991361
Alignment:
| Q |
50 |
aattaaaagccaagcaaggaatgaataaaaggagaa |
85 |
Q |
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| T |
21991326 |
aattaaaagccaagcaaggaatgaataaaaagagaa |
21991361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 34128 - 34174
Alignment:
| Q |
53 |
taaaagccaagcaaggaatgaataaaaggagaagccgcatggtaaca |
99 |
Q |
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| T |
34128 |
taaacgccaagcaaggaatgaataaaaggagaagccgcatggaaaca |
34174 |
T |
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