View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14638_high_4 (Length: 485)
Name: NF14638_high_4
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 13 - 445
Target Start/End: Complemental strand, 23310199 - 23309767
Alignment:
| Q |
13 |
gagatgaaggattggagagagctaatgatatacttttcatacccaattagagaaagagattattcaaggtggccaaacaagccagaaggatggaaagagg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23310199 |
gagatgaaggattggagagagctaatgatatacttttcatacccaattagagaaagagattattcaaggtggccaaacaagccagaaggatggaaagagg |
23310100 |
T |
|
| Q |
113 |
taacagaacaatacagtgagaatctaatgagtttaacatgcaagttgtttgaggtgttatctgaggctatgggattagaaaaagaagctttgacaaaagc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23310099 |
taacagaacaatacagtgagaatctaatgagtttaacatgcaagttgtttgaggtgttatctgaggctatgggattagaaaaagaagctttgacaaaagc |
23310000 |
T |
|
| Q |
213 |
atgtgttgatatggttcaaaagattgtggtaaattactacccaaaatgccctcaacctgaccttactcttggcctgaaacgacacactgatcctggcaca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23309999 |
atgtgttgatatggttcaaaagattgtggtaaattactacccaaaatgccctcaacctgaccttactcttggcctgaaacgacacactgatcctggcaca |
23309900 |
T |
|
| Q |
313 |
atcactctggtgtttcaagaacaagtgggtggccttcaagttactagagatgatggtgagacgtggatcactgttccgatagtgaaaggtgcttttgttg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23309899 |
atcactctggtgtttcaagaacaagtgggtggccttcaagttactagagatgatggtgagacgtggatcactgttccgatagtgaaaggtgcttttgttg |
23309800 |
T |
|
| Q |
413 |
tcaatattggagatcatggtcacgtaagtacaa |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
23309799 |
tcaatattggagatcatggtcacgtaagtacaa |
23309767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 22 - 443
Target Start/End: Complemental strand, 32091929 - 32091508
Alignment:
| Q |
22 |
gattggagagagctaatgatatacttttcatacccaattagagaaagagattattcaaggtggccaaacaagccagaaggatggaaagaggtaacagaac |
121 |
Q |
| |
|
||||||||||||||| ||| ||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32091929 |
gattggagagagctagtgacatatttttcatacccaattagacaaagagactattcaaggtggccagacaagccagaaggatggaaagaggtaacagaac |
32091830 |
T |
|
| Q |
122 |
aatacagtgagaatctaatgagtttaacatgcaagttgtttgaggtgttatctgaggctatgggattagaaaaagaagctttgacaaaagcatgtgttga |
221 |
Q |
| |
|
||||||||||||| ||||||| |||| |||||||||| || || |||||||||||||||||||| ||||||||||| ||| | ||||||||||||||||| |
|
|
| T |
32091829 |
aatacagtgagaaactaatgaatttagcatgcaagttattggaagtgttatctgaggctatggggttagaaaaagatgctctaacaaaagcatgtgttga |
32091730 |
T |
|
| Q |
222 |
tatggttcaaaagattgtggtaaattactacccaaaatgccctcaacctgaccttactcttggcctgaaacgacacactgatcctggcacaatcactctg |
321 |
Q |
| |
|
||||| |||||| ||||| | |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| || ||||| |
|
|
| T |
32091729 |
tatggatcaaaaagttgtgatcaattactacccaaaatgccctcaaccagacctaactcttggcctaaaacgacacactgaccctggcactattactcta |
32091630 |
T |
|
| Q |
322 |
gtgtttcaagaacaagtgggtggccttcaagttactagagatgatggtgagacgtggatcactgttccgatagtgaaaggtgcttttgttgtcaatattg |
421 |
Q |
| |
|
|| ||||||| ||||||||||| ||||||| ||| | |||| ||||| |||| ||||||||||||| ||| |||||||||||||||| ||| ||| |
|
|
| T |
32091629 |
ttgcttcaagaccaagtgggtggtcttcaagctaccaaagataatggtaagacatggatcactgttcaaccagttgaaggtgcttttgttgttaatcttg |
32091530 |
T |
|
| Q |
422 |
gagatcatggtcacgtaagtac |
443 |
Q |
| |
|
|||| |||||||| || ||||| |
|
|
| T |
32091529 |
gagaccatggtcatgtgagtac |
32091508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 22 - 444
Target Start/End: Complemental strand, 32068598 - 32068176
Alignment:
| Q |
22 |
gattggagagagctaatgatatacttttcatacccaattagagaaagagattattcaaggtggccaaacaagccagaaggatggaaagaggtaacagaac |
121 |
Q |
| |
|
|||||||||||| | ||||| || |||||||| ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
32068598 |
gattggagagagatgatgatctatttttcatatccaattaaacaaagagactattcaaggtggccaaacaagccagaaggatggaaagaggtgaccgaac |
32068499 |
T |
|
| Q |
122 |
aatacagtgagaatctaatgagtttaacatgcaagttgtttgaggtgttatctgaggctatgggattagaaaaagaagctttgacaaaagcatgtgttga |
221 |
Q |
| |
|
|||||||||| || |||||||||||| |||||||| | || || ||||||||||| |||||||| ||||||||||||||| | ||||||||||||||||| |
|
|
| T |
32068498 |
aatacagtgaaaagctaatgagtttatcatgcaagctattggaagtgttatctgaagctatggggttagaaaaagaagctcttacaaaagcatgtgttga |
32068399 |
T |
|
| Q |
222 |
tatggttcaaaagattgtggtaaattactacccaaaatgccctcaacctgaccttactcttggcctgaaacgacacactgatcctggcacaatcactctg |
321 |
Q |
| |
|
||||| ||| ||| ||||| | ||| |||| ||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||| || ||||| |
|
|
| T |
32068398 |
tatggatcagaagcttgtgatcaataactatccaaaatgccctcaacctgacctaactcttggactgaaaagacacactgaccctggcactattactcta |
32068299 |
T |
|
| Q |
322 |
gtgtttcaagaacaagtgggtggccttcaagttactagagatgatggtgagacgtggatcactgttccgatagtgaaaggtgcttttgttgtcaatattg |
421 |
Q |
| |
|
|| ||||||| ||||||||||| ||||||| ||| |||||| ||||| |||| |||||||||||| | | | |||||||||||||||||||||||| |
|
|
| T |
32068298 |
ttgcttcaagaccaagtgggtggtcttcaagctacaagagataatggtaagacatggatcactgttaagccaattgaaggtgcttttgttgtcaatattg |
32068199 |
T |
|
| Q |
422 |
gagatcatggtcacgtaagtaca |
444 |
Q |
| |
|
||||||||||||| || |||||| |
|
|
| T |
32068198 |
gagatcatggtcatgtgagtaca |
32068176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 40 - 275
Target Start/End: Original strand, 8624175 - 8624410
Alignment:
| Q |
40 |
atatacttttcatacccaattagagaaagagattattcaaggtggccaaacaagccagaaggatggaaagaggtaacagaacaatacagtgagaatctaa |
139 |
Q |
| |
|
||||| |||||||| ||||||| ||| ||||||||||||||||||||| |||| ||||||| |||||| |||||| |||| |||||||||| || | | |
|
|
| T |
8624175 |
atatatttttcatatccaattaaagacagagattattcaaggtggccagacaaaccagaagagtggaaaaaggtaatagaagaatacagtgaaaacttga |
8624274 |
T |
|
| Q |
140 |
tgagtttaacatgcaagttgtttgaggtgttatctgaggctatgggattagaaaaagaagctttgacaaaagcatgtgttgatatggttcaaaagattgt |
239 |
Q |
| |
|
||| |||| || || | || ||||| || || ||||| |||| |||||||| || || ||||||||||||||||| ||||||| |||||| ||||| |
|
|
| T |
8624275 |
tgaatttaggttgtaaactattagaggtattgtcagaggcaatggatttagaaaaggatgcattgacaaaagcatgtgtggatatggatcaaaaaattgt |
8624374 |
T |
|
| Q |
240 |
ggtaaattactacccaaaatgccctcaacctgacct |
275 |
Q |
| |
|
||| |||| ||||||||||| || |||||||||| |
|
|
| T |
8624375 |
ggtcaattgttacccaaaatgtcccaaacctgacct |
8624410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University