View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14638_high_6 (Length: 463)
Name: NF14638_high_6
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Complemental strand, 43077108 - 43076667
Alignment:
| Q |
17 |
agtcttctatactcaaataccaattatcaaagcatttaaatcacnnnnnnnnggacactaatttgtgatcactttccaactagaacnnnnnnncaccaaa |
116 |
Q |
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| T |
43077108 |
agtcttctatactcaaataccaattatcaaagcatttaaatcacaaaaaaa-ggacactaatttgtgatcactttccaactagaacaaaaaaacaccaaa |
43077010 |
T |
|
| Q |
117 |
ccccacctctcacatcaacaaactaaggccataaaacagaatgtgacaaaattgtaatggaataataacaaaacnnnnnnnn---gtataatagcacaag |
213 |
Q |
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| T |
43077009 |
ccccacctctcacatgaacaaaccaaggccataaaacagaatgtgacaaaattgtaatggaataataacaaaaacaaaaaaaaaagtataatagcacaag |
43076910 |
T |
|
| Q |
214 |
tacttacgtgtaaacccctgcatgaaccttaatgacaactctcactaaattaatgaagggaagggaatcaatggctgcttgaattgatgaaaatcctcct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43076909 |
tacttacgtgtaaacccctgcatgaaccttaatgacaactctcactaaattaatgaagggaagggaatcaatggctgcttgaattgatgaaaatcctcct |
43076810 |
T |
|
| Q |
314 |
ttacttgaatgtttataaacgttcaaagtataagaaggaaaaagcttatttttggctgttctaaagacagtatgtttgagaccaccaacaaatttcaccc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43076809 |
ttacttgaatgtttataaacgttcaaagtataagaaggaaaaagcttatttttggctgttctaaagacagtatgtttgagaccaccaacaaatttcaccc |
43076710 |
T |
|
| Q |
414 |
atttcatgaattgttgttctgattcttggactttggtcatatt |
456 |
Q |
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| T |
43076709 |
atttcatgaattgttgttctgattcttggactttggtcatatt |
43076667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 214 - 434
Target Start/End: Original strand, 33966669 - 33966889
Alignment:
| Q |
214 |
tacttacgtgtaaacccctgcatgaaccttaatgacaactctcactaaattaatgaagggaagggaatcaatggctgcttgaattg-atgaaaatcctcc |
312 |
Q |
| |
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|||| |||||||||| |||||||||||||| ||||||||||| || | ||| ||| | ||||| ||||||||||| |||||||| || |||||| ||| |
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| T |
33966669 |
tactcacgtgtaaactcctgcatgaaccttgatgacaactctaacaagattgatggaaggaagagaatcaatggcattttgaattgtatcaaaatc-tcc |
33966767 |
T |
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| Q |
313 |
tttacttgaatgtttataaacgttcaaagtataagaaggaaaaagcttatttttggctgttctaaagacagtatgtttgagaccaccaacaaatttcacc |
412 |
Q |
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| | || |||| ||||| |||||||||||||| ||| ||||||||||| || | | | ||||| |||||||||||||||||||| ||||| |
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| T |
33966768 |
aaaagaaggattcttatcaacgtgcaaagtataagaagcaaatagcttattttttgcagccttgtaaacagtgtgtttgagaccaccaacaaaactcacc |
33966867 |
T |
|
| Q |
413 |
catttcatgaattgttgttctg |
434 |
Q |
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|||||||||||||||||||||| |
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| T |
33966868 |
catttcatgaattgttgttctg |
33966889 |
T |
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