View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14638_high_7 (Length: 444)
Name: NF14638_high_7
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 231 - 432
Target Start/End: Original strand, 34129513 - 34129704
Alignment:
| Q |
231 |
tttgtttgtgtatgcatttatttacttacctcttcttcacctgatgatgggaaaatgctttagttggcggcagtggtgaaagaggtatacgcctttgttg |
330 |
Q |
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| T |
34129513 |
tttgtttgtgtatgcatttatttacttacctcttc---acctgat---gggaaaatgctttagttggcggcagtcgtgaaagcggtatatgcctttgttg |
34129606 |
T |
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| Q |
331 |
acattataatgcaatgaatatatgctgctcaaatttggttgaagtgttgaactttggtatcatcatgaaacgtgcccgtacgtaaatttgttgccctttg |
430 |
Q |
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| T |
34129607 |
acattataatgcaatgaatatatgttgctcaaatttggttgaagtgttgaactttggtatcatcatgaaacgtgcc----cgtaaatttgtttccctttg |
34129702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 34128186 - 34128292
Alignment:
| Q |
1 |
ctaagtcggagacaaagtgttactcgagggactaacttgaaggtttattcttattattgttgagtactttaaatatttttaacgttaaattaaatatttc |
100 |
Q |
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| T |
34128186 |
ctaagtcggagacaaagtgttactcgagcgactaacttgaaggtttattcttattattgttgagtactttaaatatttttaacgttaaattaaatatttc |
34128285 |
T |
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| Q |
101 |
tctacaa |
107 |
Q |
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| T |
34128286 |
tcaacaa |
34128292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 34128360 - 34128403
Alignment:
| Q |
175 |
gatggtgtggttatcatacagatggaagcttagaattgaatgat |
218 |
Q |
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| T |
34128360 |
gatggtgtggttatcatacagatggaagcttagaattgaatgat |
34128403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 48558809 - 48558846
Alignment:
| Q |
57 |
ttgttgagtactttaaatatttttaacgttaaattaaa |
94 |
Q |
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| T |
48558809 |
ttgttaagtactttaaatatttttaacattaaattaaa |
48558846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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