View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14638_high_8 (Length: 427)
Name: NF14638_high_8
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 22 - 417
Target Start/End: Complemental strand, 39592581 - 39592188
Alignment:
| Q |
22 |
gttttatattcgaagcttttttgtattgtgcattgagcatcaaacaaaacaaaatataatgtggtaactcaaatcaatattctataaaatnnnnnnntgt |
121 |
Q |
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| T |
39592581 |
gttttatattcggagcttttttgtaccgtgcattgagcatcaaacaaaacaaaatataatgtggtaactcaaatcaatattctataaaa---aaaaatat |
39592485 |
T |
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| Q |
122 |
ttctgctgttgattactgcttgttaacaaaccaaaaaatagaacgagaagttttatagtaaaccctttatattattcactctttaatgtgtatcaatata |
221 |
Q |
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| T |
39592484 |
ttctgctgttgattactgcttgtcaacaaaccaaaaaatagaacgagaagttttatagtaaaccctttatattattcactctttaatgtgtatcagtata |
39592385 |
T |
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| Q |
222 |
atttgaggtttttatgatttttaagctagcagattggtgaaattgattactgcactattaaatgatctttcatgcgaatgagctgtacagaagcactcac |
321 |
Q |
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| T |
39592384 |
atttgaggtttttatgatttttaagctagcagattggtgaaattgattactgcactattaaatgatctttcatgcgaatgagctgtacagaagcactcac |
39592285 |
T |
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| Q |
322 |
aatactataaaaatggagatcttgttttatccaagattaaagagaaactcaccttccaatcacatgttacttactttt-ccatctgtttcatctcac |
417 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
39592284 |
aatactataaaaatagagatcttgttttatccaagattaaagagaaactcaccttccaatcacatgttacttacttttcccatctgtttcatatcac |
39592188 |
T |
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