View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14638_low_11 (Length: 419)
Name: NF14638_low_11
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 45944992 - 45945394
Alignment:
| Q |
1 |
agttataagtacataagagaatttggttggaatgaaactttggccaggagttcatacgagtgggttgaaaagaaggttgtttttgagccttcaatgcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45944992 |
agttataagtacataagagaatttggttggaatgaaactttggccaggagttcatacgagtgggttgaaaagaaggttgtttttgagccttcaatgcttc |
45945091 |
T |
|
| Q |
101 |
aatggcaatcagcagttagggacggtttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatatgggactaaggttggagggac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45945092 |
aatggcaatcagcagttagggacggtttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatatgggactaaggttggagggac |
45945191 |
T |
|
| Q |
201 |
aacttttgagaaggaaggttataaacacactgcagctgatttgttagagtatgccgatccaaagagaatttctgtttatttgcatgccacagttcaaaag |
300 |
Q |
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| T |
45945192 |
aattttcgataaggaaggtcataaacacactgcagctgatttgttagagtatgccgatccaaagagaatttctgtttatttgcatgccacagttcaaaag |
45945291 |
T |
|
| Q |
301 |
atactattcaagtggaatgcaggtatgtaatgtatctaagaatacatatgcctcattgttagctacttagctttttacatcggatccaacactattggtc |
400 |
Q |
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| T |
45945292 |
atactattcaagtggaatgcaggtatgtaatgtatctaagaatacatacgcctcattgttagctacttagctttttacatcggatccaacactattggtc |
45945391 |
T |
|
| Q |
401 |
ttg |
403 |
Q |
| |
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||| |
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| T |
45945392 |
ttg |
45945394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 10 - 313
Target Start/End: Original strand, 45938237 - 45938540
Alignment:
| Q |
10 |
tacataagagaatttggttggaatgaaactttggccaggagttcatacgagtgggttgaaaagaaggttgtttttgagccttcaatgcttcaatggcaat |
109 |
Q |
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||||||||||| | ||||||||||||||||||||| | || |||||| || ||| ||||||||||||||| |||||||||| |||| | |||||| ||| |
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| T |
45938237 |
tacataagagattctggttggaatgaaactttggctaagatttcatatgaatggattgaaaagaaggttgcttttgagcctcaaatgatgcaatggtaat |
45938336 |
T |
|
| Q |
110 |
cagcagttagggacggtttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatatgggactaaggttggagggacaacttttga |
209 |
Q |
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||||||| ||||| ||||||| |||||||||| |||| |||||||| |||||| | |||||||| | ||||||||||||||||| ||||||| |||||| |
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| T |
45938337 |
cagcagtgagggatggtttacctgaagcaggggttttaccttacaatggttttgcttttgatcacttgtatgggactaaggttggtgggacaatttttga |
45938436 |
T |
|
| Q |
210 |
gaaggaaggttataaacacactgcagctgatttgttagagtatgccgatccaaagagaatttctgtttatttgcatgccacagttcaaaagatactattc |
309 |
Q |
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| T |
45938437 |
taaggaaggttatagacacactgcagctgatttgttagagtatgctgatccaaagaaaatttcggtttatttgcatgcgacagttcaaaagatactattc |
45938536 |
T |
|
| Q |
310 |
aagt |
313 |
Q |
| |
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|||| |
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|
| T |
45938537 |
aagt |
45938540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 240
Target Start/End: Original strand, 3091863 - 3092022
Alignment:
| Q |
81 |
ttttgagccttcaatgcttcaatggcaatcagcagttagggacggtttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatat |
180 |
Q |
| |
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|||| ||||| | |||| ||||||||||||||||||||| || || ||| | |||| ||| | ||||||||||| || ||||| | ||||||| | || |
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| T |
3091863 |
ttttcagcctcctatgcgtcaatggcaatcagcagttagagatggattattggaagtaggtgtgttgccttacaatggctttacttatgatcatattcat |
3091962 |
T |
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| Q |
181 |
gggactaaggttggagggacaacttttgagaaggaaggttataaacacactgcagctgat |
240 |
Q |
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||||||||||||||||| |||| ||||| | | ||| ||| |||||||||||||||| |
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| T |
3091963 |
gggactaaggttggaggtacaatctttgaccataatggtcatagacacactgcagctgat |
3092022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 3083436 - 3083544
Alignment:
| Q |
94 |
atgcttcaatggcaatcagcagttagggacggtttacttgaagcagggattttgccttacaacggttttacatttgatcatgtatatgggactaaggttg |
193 |
Q |
| |
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|||| ||||||||||||||||||||| || || ||| | |||| ||| | ||||||||||| || ||||| | |||||| | ||||||||||||||| |
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| T |
3083436 |
atgcgtcaatggcaatcagcagttagagatggattattggaagtaggtgtgttgccttacaatggctttacttatgatcacattcatgggactaaggttg |
3083535 |
T |
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| Q |
194 |
gagggacaa |
202 |
Q |
| |
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|||| |||| |
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| T |
3083536 |
gaggtacaa |
3083544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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