View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14638_low_12 (Length: 403)
Name: NF14638_low_12
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 388
Target Start/End: Original strand, 2260312 - 2260690
Alignment:
| Q |
17 |
agaacaaccgtgctgggtgggtgcctatactccctctttattcgtgctttctttattggtacgaattcgtgcaattttagtgtatgtttgatattaaggt |
116 |
Q |
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| T |
2260312 |
agaacaaccgtgctgggtgggtgcctatactccctctttattcgtgcattctttattggtacgaattcatgcaattttagtgtatgtttgatattaaggt |
2260411 |
T |
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| Q |
117 |
ggatacgcaagaatcaccgtgattttgtagaaggtacaaattgtagtttcagaaaactcacagtgggt-------attttgacatatctatggtgatatc |
209 |
Q |
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| T |
2260412 |
ggatacgcaagaatcaccgtaattttgtagaaggtacaaattgtagtttctgaaaaatcacagtggatcgttgtaattttgacatatctatggtgatatc |
2260511 |
T |
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| Q |
210 |
aaacattatataatgtagcacaaaatactagggttttttaattaactaactgttacatttctgtgcctatccaaccaattgcagatgcttcagagcattg |
309 |
Q |
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| T |
2260512 |
aaacactatctaatgtagcacaaaatactaggtttttttaattaactaactgttacatttctgtgcctatccaaccaattgcagatgcttcagagcgttg |
2260611 |
T |
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| Q |
310 |
gaaatgctggaacatgaatattgctatctcaagaacaaattgcatgaactattccaagtaaagttgcactcaacctaat |
388 |
Q |
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| T |
2260612 |
gaaatgctggaacatgaatattgctatctcaagaacaaattgcatgaactattccaagtaaagttgcactcaacctaat |
2260690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 374
Target Start/End: Complemental strand, 44733417 - 44733329
Alignment:
| Q |
286 |
aattgcagatgcttcagagcattggaaatgctggaacatgaatattgctatctcaagaacaaattgcatgaactattccaagtaaagtt |
374 |
Q |
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| T |
44733417 |
aattgcagatgtttgcgagcgttggaaatgctggagcatgaatattgttatcttaagaacaaattgcacgaactcttccaagtaaagtt |
44733329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 36322770 - 36322713
Alignment:
| Q |
127 |
gaatcaccgtgattttgtagaaggtacaaattgtagtttcagaaaactcacagtgggt |
184 |
Q |
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| T |
36322770 |
gaatcaccgtgattttgtagaagctacaaagtgtagtttttgaaaaatcacggtgggt |
36322713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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