View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14638_low_14 (Length: 393)
Name: NF14638_low_14
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 377
Target Start/End: Original strand, 34223351 - 34223708
Alignment:
| Q |
20 |
ctgaaaacataaactttttcgctagtgaatttggttttaacaatcatgccttgccttaatctaaaactcaggattgtcggaagatgacagaagccatgca |
119 |
Q |
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| T |
34223351 |
ctgaaaacataaactttttcgctagtgaatttggttttaacaatcatgccttgccttaatctaaaactcaggattgtcggaagatgacagaagccatgca |
34223450 |
T |
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| Q |
120 |
tgcagagagagtgaaacaaactatctggtaatgtactagtcaaaagattaaaaggttgcacaaaaacatacactaagaatgtttctatatgaatttttac |
219 |
Q |
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| T |
34223451 |
tgcagagagagtgaaacaaactatctggtaatgtactagtcaaaagattaaaaggttgcagaaaaacatacactaagaatggttctatatgaatttttac |
34223550 |
T |
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| Q |
220 |
aactttagccaaacaacnnnnnnnttagatttttatacaaaacaaagctactctgtatttctctcaaagaatccatatcaatccccaaataattaacaga |
319 |
Q |
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| T |
34223551 |
aactttagccaaacaacaaaaaaattagatttttatacaaaacaaagctactctgtatttctctcaaagaatccatatcaatccccaaataattaacaga |
34223650 |
T |
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| Q |
320 |
aacagaacatcataaaactaataatgcaggcagatagataaacataaaaccacatata |
377 |
Q |
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| T |
34223651 |
aacagaacatcataaaactaataatgcaggcagatagataaacataaaaccacatata |
34223708 |
T |
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