View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14638_low_15 (Length: 392)

Name: NF14638_low_15
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14638_low_15
NF14638_low_15
[»] chr7 (18 HSPs)
chr7 (21-233)||(2337249-2337461)
chr7 (21-233)||(2329350-2329562)
chr7 (234-380)||(2335949-2336095)
chr7 (22-220)||(1088326-1088521)
chr7 (22-226)||(1550993-1551203)
chr7 (234-380)||(2319586-2319732)
chr7 (21-225)||(3955750-3955951)
chr7 (22-111)||(1557703-1557792)
chr7 (22-225)||(1595727-1595927)
chr7 (21-224)||(2320864-2321064)
chr7 (22-111)||(1105781-1105870)
chr7 (22-111)||(1541759-1541848)
chr7 (22-111)||(1604168-1604257)
chr7 (241-380)||(1087053-1087195)
chr7 (241-380)||(1594552-1594694)
chr7 (21-73)||(30792125-30792177)
chr7 (21-112)||(9532343-9532433)
chr7 (314-380)||(2327808-2327874)
[»] scaffold0491 (4 HSPs)
scaffold0491 (234-380)||(7777-7923)
scaffold0491 (22-111)||(1409-1498)
scaffold0491 (22-111)||(6296-6385)
scaffold0491 (313-380)||(3232-3299)
[»] chr8 (8 HSPs)
chr8 (234-380)||(18751401-18751550)
chr8 (22-111)||(18723803-18723892)
chr8 (22-111)||(18739530-18739619)
chr8 (22-111)||(18744494-18744583)
chr8 (22-108)||(18749455-18749541)
chr8 (313-380)||(18741426-18741493)
chr8 (313-380)||(18746390-18746457)
chr8 (313-378)||(18755597-18755662)
[»] chr4 (4 HSPs)
chr4 (21-112)||(16880077-16880168)
chr4 (36-112)||(54122708-54122784)
chr4 (36-112)||(48712677-48712753)
chr4 (36-112)||(42978019-42978095)
[»] chr1 (1 HSPs)
chr1 (21-112)||(19250188-19250279)
[»] chr6 (1 HSPs)
chr6 (36-112)||(1257601-1257677)
[»] chr5 (3 HSPs)
chr5 (36-112)||(39102531-39102607)
chr5 (36-112)||(36620399-36620475)
chr5 (36-112)||(8873340-8873416)
[»] chr3 (1 HSPs)
chr3 (36-112)||(31657807-31657883)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 2337461 - 2337249
Alignment:
Q  21 aatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttgatgttgtt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  2337461 aatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcaaaattccatatacaaaacaaatccccattctttgttgatattgtt 2337362  T
Q  121 gtatttggaagcttgttcttaatagaattttgacgaagtttcaagaatattagaagtgagaaggctaagatcagaatcaaaaggatagaaagaacaatga 220  Q
    || |||| ||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2337361 gtgtttgcaagcttgatcttagtagaattttgacgaagtttgaagcatattagaagtgagaaggctaagatcagaatcaaaaggataggaagaacaatga 2337262  T
Q  221 caacatcatagtt 233  Q
    |||||||||||||    
T  2337261 caacatcatagtt 2337249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 2329562 - 2329350
Alignment:
Q  21 aatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttgatgttgtt 120  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  2329562 aatgtcaaagtcttctgttgctttaatgatgtcatcgtgtgctatttttccatcaaaattccatatacaaaacaaatccccattctttgttgatattgtt 2329463  T
Q  121 gtatttggaagcttgttcttaatagaattttgacgaagtttcaagaatattagaagtgagaaggctaagatcagaatcaaaaggatagaaagaacaatga 220  Q
    || |||| ||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2329462 gtgtttgcaagcttgatcttagtagaattttgacgaagtttgaagcatattagaagtgagaaggctaagatcagaatcaaaaggataggaagaacaatga 2329363  T
Q  221 caacatcatagtt 233  Q
    |||||||||||||    
T  2329362 caacatcatagtt 2329350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 234 - 380
Target Start/End: Complemental strand, 2336095 - 2335949
Alignment:
Q  234 actattcattatagcatttgcgttcatttgaagttgagatttcattgtggcagattaagtacctacaatgaaaatccagataagaagaaagaccatcctc 333  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2336095 actattcattatagcatttgcttccatttgaagttgagatttcattgtggcagattgagtacctacaatgaaaatccagataagaagaaagaccatcctc 2335996  T
Q  334 atttttggaccataggaattggaaactaaatattttgtcaagttcat 380  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  2335995 atttttggaccataggaattggaaactaaatattttgttaagttcat 2335949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 220
Target Start/End: Complemental strand, 1088521 - 1088326
Alignment:
Q  22 atgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttgatgttgttg 121  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||||||| ||||||||||||| |||||||| |||  ||||||||||||   | ||||    
T  1088521 atgtcaaagtcctctgttgctttaataatgtcatcgaatgctatttttccgtcataattccatacacaaaacatatctacattctttgttg---tcgttg 1088425  T
Q  122 tatttggaagcttgttcttaatagaattttgacgaagtttcaagaatattagaagtgagaaggctaagatcagaatcaaaaggatagaaagaacaatga 220  Q
    | |||  | |||||||||||| |||| | ||||||||||| ||| |||| |||| ||| ||||||||||| | |||   |||||| |||||||||||||    
T  1088424 tgttttcatgcttgttcttaacagaactatgacgaagtttgaagcatatgagaaatgataaggctaagattataatactaaggattgaaagaacaatga 1088326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 22 - 226
Target Start/End: Original strand, 1550993 - 1551203
Alignment:
Q  22 atgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccat------tctttgttgatg 115  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||| ||||| ||||||| |||||||||||||||||      |  |||||| ||    
T  1550993 atgtcaaagtcttctgttgctttaataatgtcatcaaatgctatttttccgtcatagttccatacacaaaacaaatccccatttgttgttgttgttgttg 1551092  T
Q  116 ttgttgtatttggaagcttgttcttaatagaattttgacgaagtttcaagaatattagaagtgagaaggctaagatcagaatcaaaaggatagaaagaac 215  Q
    |||||||  ||| | |||||||||||| |||  | ||||||| ||| ||| |||| | |||||| ||||||||||| ||||| | |||||||| |||| |    
T  1551093 ttgttgttattgcatgcttgttcttaacagaggtatgacgaaatttgaagcatatgataagtgataaggctaagattagaataataaggataggaagagc 1551192  T
Q  216 aatgacaacat 226  Q
    ||||| |||||    
T  1551193 aatgaaaacat 1551203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 234 - 380
Target Start/End: Complemental strand, 2319732 - 2319586
Alignment:
Q  234 actattcattatagcatttgcgttcatttgaagttgagatttcattgtggcagattaagtacctacaatgaaaatccagataagaagaaagaccatcctc 333  Q
    |||||| | ||| |||||||| | ||| ||| |||||||| ||| || |||||||| |||||| |||||||||  ||| ||||||||||||||||||| |    
T  2319732 actatttaatatcgcatttgcttccatatgaggttgagatgtcactgaggcagattgagtacccacaatgaaaggccaaataagaagaaagaccatccac 2319633  T
Q  334 atttttggaccataggaattggaaactaaatattttgtcaagttcat 380  Q
    |||||  |||||||| ||||||||||||| |||||| ||||||||||    
T  2319632 attttctgaccatagaaattggaaactaagtattttatcaagttcat 2319586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 3955750 - 3955951
Alignment:
Q  21 aatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttgatgttgtt 120  Q
    |||||||||||||| ||||||| |||| ||||||| || ||||||||| ||||||||||||||||||||||| ||||| ||||| || ||   |||        
T  3955750 aatgtcaaagtcttttgttgctctaatgatgtcattgtatgctattttgccatcataattccatatacaaaataaatcaccattattcgt---tgtctcc 3955846  T
Q  121 gtatttggaagcttgttcttaatagaattttgacgaagtttcaagaatattagaagtgagaaggctaagatcagaatcaaaaggatagaaagaacaatga 220  Q
    || |||  | |||||||||| |||||||| |||||| |||| ||| | |  |||||||||||||||| ||| |||||  ||||||||| |||||||||||    
T  3955847 gtgtttccatgcttgttcttgatagaattatgacgacgtttgaagtacacgagaagtgagaaggctatgattagaatagaaaggataggaagaacaatga 3955946  T
Q  221 caaca 225  Q
     ||||    
T  3955947 aaaca 3955951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 1557703 - 1557792
Alignment:
Q  22 atgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgtt 111  Q
    ||||||||||||||||||||||| || |||||||| | ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  1557703 atgtcaaagtcttctgttgctttgatgatgtcatcatatgctattttcccatcataattccatatacaaaacatatctccattctttgtt 1557792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 1595927 - 1595727
Alignment:
Q  22 atgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttgatgttgttg 121  Q
    ||||||||||||||||||||||| || |||||||| | |||||| || ||||||||||||||||||||||||| ||| |||||||||||   | |||||     
T  1595927 atgtcaaagtcttctgttgctttgattatgtcatcatatgctatcttcccatcataattccatatacaaaacatatctccattctttgt---ttttgtta 1595831  T
Q  122 tatttggaagcttgttcttaatagaattttgacgaagtttcaagaatattagaagtgagaaggctaagatcagaatcaaaaggatagaaagaacaatgac 221  Q
    | |||  | ||   || ||| ||||||| ||| || |||||||| |||| |||||||||||| ||| ||  ||||| | |||||| | ||||||||||||    
T  1595830 tgtttccatgcaacttattagtagaattatgatgatgtttcaagtatatgagaagtgagaagactaggactagaataataaggatcggaagaacaatgac 1595731  T
Q  222 aaca 225  Q
    ||||    
T  1595730 aaca 1595727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 2321064 - 2320864
Alignment:
Q  21 aatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttgatgttgtt 120  Q
    ||||||||| ||||| |||||| |||| |||||||| | |||||||| |||||| |||||||||||| |||| ||||||||||||||| |   ||||| |    
T  2321064 aatgtcaaaatcttccgttgctctaatgatgtcatcatatgctatttgtccatcgtaattccatatagaaaagaaatccccattcttttt---tgttgat 2320968  T
Q  121 gtatttggaagcttgttcttaatagaattttgacgaagtttcaagaatattagaagtgagaaggctaagatcagaatcaaaaggatagaaagaacaatga 220  Q
     ||| ||   |||||||||| |||||||| |||  |||||||||| | || | ||||||||||| |||||| ||||| |  || |||| ||||||||||     
T  2320967 ttatctgcttgcttgttcttgatagaattatgattaagtttcaagcagatgataagtgagaaggttaagattagaataatgagtataggaagaacaatgg 2320868  T
Q  221 caac 224  Q
    ||||    
T  2320867 caac 2320864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 1105870 - 1105781
Alignment:
Q  22 atgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgtt 111  Q
    |||||||||||||| |||||||| || |||||||| | |||||| || ||||||||||||||||||||||||| ||| ||||||||||||    
T  1105870 atgtcaaagtcttccgttgctttgattatgtcatcatatgctatcttcccatcataattccatatacaaaacatatctccattctttgtt 1105781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 1541759 - 1541848
Alignment:
Q  22 atgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgtt 111  Q
    ||||| ||||||||||||||||| || |||||||| | |||||| || ||||||||||||||||||||||||| ||| ||||||||||||    
T  1541759 atgtcgaagtcttctgttgctttgatgatgtcatcatatgctatcttcccatcataattccatatacaaaacatatctccattctttgtt 1541848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 1604257 - 1604168
Alignment:
Q  22 atgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgtt 111  Q
    ||||| |||||||| |||||| |||  |||||||| | |||||| || ||||||||||||||||||||||||| ||| ||||||||||||    
T  1604257 atgtcgaagtcttccgttgctctaacgatgtcatcatatgctatcttcccatcataattccatatacaaaacatatctccattctttgtt 1604168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 380
Target Start/End: Complemental strand, 1087195 - 1087053
Alignment:
Q  241 attatagcatttgcgttcatttgaagttgagatttcattgtggcag---attaagtacctacaatgaaaatccagataagaagaaagaccatcctcattt 337  Q
    |||||||||||||| | |||||||||||||||| |||| |||||||   ||| ||| || ||||| ||| | || |||| ||||||| | |||| |||||    
T  1087195 attatagcatttgcttccatttgaagttgagatgtcatagtggcagcagattgagttcccacaatcaaactgcaaataataagaaaggcaatccacattt 1087096  T
Q  338 ttggaccataggaattggaaactaaatattttgtcaagttcat 380  Q
    ||||| || || |||| |||||||||||||||||  |||||||    
T  1087095 ttggatcaaagaaatttgaaactaaatattttgtgtagttcat 1087053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 380
Target Start/End: Complemental strand, 1594694 - 1594552
Alignment:
Q  241 attatagcatttgcgttcatttgaagtt---gagatttcattgtggcagattaagtacctacaatgaaaatccagataagaagaaagaccatcctcattt 337  Q
    ||||| |||||||| | |||||||||||   ||||| || || ||||||||| ||| || ||| | | | | || |||||||||||| | ||| ||||||    
T  1594694 attattgcatttgcttccatttgaagtttatgagatgtcgttttggcagattgagttcccacagtcagactgcaaataagaagaaaggcaatcatcattt 1594595  T
Q  338 ttggaccataggaattggaaactaaatattttgtcaagttcat 380  Q
    |||||||| ||||||| |||| |||||||||| ||||||||||    
T  1594594 ttggaccaaaggaatttgaaattaaatattttctcaagttcat 1594552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 30792177 - 30792125
Alignment:
Q  21 aatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccat 73  Q
    ||||||||||| || ||||||||||||||||||| | | ||||||||||||||    
T  30792177 aatgtcaaagtgttatgttgctttaataatgtcaacatatgctatttttccat 30792125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 9532343 - 9532433
Alignment:
Q  21 aatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttg 112  Q
    ||||||||||| || | |||||||||||||||||   | ||||||||  ||||||||||| ||||| |||||||||| |  |||||||||||    
T  9532343 aatgtcaaagtgttgtattgctttaataatgtcaaaatatgctatttc-ccatcataatttcatatgcaaaacaaattctaattctttgttg 9532433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 2327874 - 2327808
Alignment:
Q  314 taagaagaaagaccatcctcatttttggaccataggaattggaaactaaatattttgtcaagttcat 380  Q
    ||||||||||||||| || ||||||||||  || | |||| | || |||||||||||||||||||||    
T  2327874 taagaagaaagaccacccacatttttggaatattgaaattaggaaataaatattttgtcaagttcat 2327808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 234 - 380
Target Start/End: Original strand, 7777 - 7923
Alignment:
Q  234 actattcattatagcatttgcgttcatttgaagttgagatttcattgtggcagattaagtacctacaatgaaaatccagataagaagaaagaccatcctc 333  Q
    |||||| | |||||||||||| | |||||||||||||||| ||||||||||||||| ||| ||  |||  |||   || ||||||||||||||||||| |    
T  7777 actatttaatatagcatttgcttccatttgaagttgagatgtcattgtggcagattgagttccctcaaccaaaccgcaaataagaagaaagaccatccac 7876  T
Q  334 atttttggaccataggaattggaaactaaatattttgtcaagttcat 380  Q
    |||||||||||| || |||| |||| |||||||||| ||||| ||||    
T  7877 atttttggaccaaagaaatttgaaattaaatattttttcaagctcat 7923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 1409 - 1498
Alignment:
Q  22 atgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgtt 111  Q
    ||||||||||||||||||||||| || |||||||| | |||||| || |||||| |||||||||||||||||| ||| ||||||||||||    
T  1409 atgtcaaagtcttctgttgctttgatgatgtcatcatatgctatcttcccatcaaaattccatatacaaaacatatctccattctttgtt 1498  T

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Target: scaffold0491; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 6296 - 6385
Alignment:
Q  22 atgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgtt 111  Q
    ||||||||||||||||| ||||| || |||||||| | ||||||  ||||||||||||||||||||||||||| ||| ||||||||||||    
T  6296 atgtcaaagtcttctgtcgctttgattatgtcatcatatgctatcattccatcataattccatatacaaaacatatctccattctttgtt 6385  T

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Target: scaffold0491; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 3232 - 3299
Alignment:
Q  313 ataagaagaaagaccatcctcatttttggaccataggaattggaaactaaatattttgtcaagttcat 380  Q
    ||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||| ||||||||||    
T  3232 ataagaagaaagaccatccacatttttggaccaaagaaatttgaaactaaatattttatcaagttcat 3299  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 380
Target Start/End: Original strand, 18751401 - 18751550
Alignment:
Q  234 actattcattatagcatttgcgttcatttgaagttga---gatttcattgtggcagattaagtacctacaatgaaaatccagataagaagaaagaccatc 330  Q
    |||||| | |||||||||||| | |||||||||||||   ||| ||||||||||||||| ||| ||  |||  |||   || ||||||||||||||||||    
T  18751401 actatttaatatagcatttgcttccatttgaagttgatgagatgtcattgtggcagattgagttccctcaaccaaaccgcaaataagaagaaagaccatc 18751500  T
Q  331 ctcatttttggaccataggaattggaaactaaatattttgtcaagttcat 380  Q
    | ||||||||||||| || |||| ||||||||||||||| ||||||||||    
T  18751501 cacatttttggaccaaagaaatttgaaactaaatattttatcaagttcat 18751550  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 18723803 - 18723892
Alignment:
Q  22 atgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgtt 111  Q
    ||||||||||||||||| ||||| || |||||||| | ||||||  ||||||||||||||||||||||||||| ||| ||||||||||||    
T  18723803 atgtcaaagtcttctgtcgctttgattatgtcatcatatgctatcattccatcataattccatatacaaaacatatctccattctttgtt 18723892  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 18739530 - 18739619
Alignment:
Q  22 atgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgtt 111  Q
    ||||||||||||||||||||||| || |||||||| | |||||| || |||||| |||||||||||||||||| ||| ||||||||||||    
T  18739530 atgtcaaagtcttctgttgctttgatgatgtcatcatatgctatcttcccatcaaaattccatatacaaaacatatctccattctttgtt 18739619  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 18744494 - 18744583
Alignment:
Q  22 atgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgtt 111  Q
    ||||||||||||||||||||||| || |||||||| | |||||| || |||||| |||||||||||||||||| ||| ||||||||||||    
T  18744494 atgtcaaagtcttctgttgctttgatgatgtcatcatatgctatcttcccatcaaaattccatatacaaaacatatctccattctttgtt 18744583  T

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Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 18749455 - 18749541
Alignment:
Q  22 atgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattcttt 108  Q
    ||||||||||||||||| ||||| || |||||||| | ||||||  ||||||||||||||||||||||||||| ||| |||||||||    
T  18749455 atgtcaaagtcttctgtcgctttgattatgtcatcatatgctatcattccatcataattccatatacaaaacatatctccattcttt 18749541  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 18741426 - 18741493
Alignment:
Q  313 ataagaagaaagaccatcctcatttttggaccataggaattggaaactaaatattttgtcaagttcat 380  Q
    ||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||| ||||||||||    
T  18741426 ataagaagaaagaccatccacatttttggaccaaagaaatttgaaactaaatattttatcaagttcat 18741493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 18746390 - 18746457
Alignment:
Q  313 ataagaagaaagaccatcctcatttttggaccataggaattggaaactaaatattttgtcaagttcat 380  Q
    ||||||||||||||||||| ||||||||||||| || |||| ||||||||||||||| ||||||||||    
T  18746390 ataagaagaaagaccatccacatttttggaccaaagaaatttgaaactaaatattttatcaagttcat 18746457  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 378
Target Start/End: Original strand, 18755597 - 18755662
Alignment:
Q  313 ataagaagaaagaccatcctcatttttggaccataggaattggaaactaaatattttgtcaagttc 378  Q
    |||||||||||| |  ||| ||| |||||||||  | |||| ||||||||||||||||||||||||    
T  18755597 ataagaagaaaggcattccacatatttggaccaatgaaatttgaaactaaatattttgtcaagttc 18755662  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 16880168 - 16880077
Alignment:
Q  21 aatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttg 112  Q
    ||||||||||| || |||| |||||||||||||  | | ||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  16880168 aatgtcaaagtgttgtgtttctttaataatgtccacatatgctatttttccatcataattccatatgcaaaacaaattcccattctttgttg 16880077  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 54122784 - 54122708
Alignment:
Q  36 tgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttg 112  Q
    ||||||||||||||||||||| | || ||||||||||||||||||||||||   |||||||| | ||||||||||||    
T  54122784 tgttgctttaataatgtcatcatatgttatttttccatcataattccatatgtcaaacaaattctcattctttgttg 54122708  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 48712677 - 48712753
Alignment:
Q  36 tgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttg 112  Q
    |||||||||||||| |||||| | || ||||||||||||||||||||||||   |||||||| | ||||||||||||    
T  48712677 tgttgctttaataaagtcatcatatgttatttttccatcataattccatatgtcaaacaaattctcattctttgttg 48712753  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 42978019 - 42978095
Alignment:
Q  36 tgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttg 112  Q
    ||||||||||||||  ||||| | || ||||||| ||||||||||||||||   |||||||| | ||||||||||||    
T  42978019 tgttgctttaataacatcatcatatgttatttttacatcataattccatatgtcaaacaaattctcattctttgttg 42978095  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 19250279 - 19250188
Alignment:
Q  21 aatgtcaaagtcttctgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttg 112  Q
    ||||||||||| || ||||||||||||||||||| | | ||||||||||||||||||||  |||||  ||||||||| | ||||||||||||    
T  19250279 aatgtcaaagtgttgtgttgctttaataatgtcaacatatgctatttttccatcataatatcatatgtaaaacaaattcacattctttgttg 19250188  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 1257677 - 1257601
Alignment:
Q  36 tgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttg 112  Q
    ||||||||||||||||||||| | || ||||||||||||||||||||||||   |||||||| | ||||||||||||    
T  1257677 tgttgctttaataatgtcatcatatgttatttttccatcataattccatatgtcaaacaaattctcattctttgttg 1257601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 39102531 - 39102607
Alignment:
Q  36 tgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttg 112  Q
    ||||||||||||||||||||| | || ||||||||||||||||||||||||   |||||||| | ||||||||||||    
T  39102531 tgttgctttaataatgtcatcatatgttatttttccatcataattccatatgtcaaacaaattctcattctttgttg 39102607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 36620475 - 36620399
Alignment:
Q  36 tgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttg 112  Q
    ||||||||||||||||||||| | || ||||||||||||||||||||||||    ||||||| | ||||||||||||    
T  36620475 tgttgctttaataatgtcatcatatgttatttttccatcataattccatatgtcgaacaaattctcattctttgttg 36620399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 8873340 - 8873416
Alignment:
Q  36 tgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttg 112  Q
    ||||||||||||||||||||| | || |||||||||||||||||| |||||   ||||||||   ||||||||||||    
T  8873340 tgttgctttaataatgtcatcatatgttatttttccatcataatttcatatgtcaaacaaattatcattctttgttg 8873416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 31657883 - 31657807
Alignment:
Q  36 tgttgctttaataatgtcatcgtgtgctatttttccatcataattccatatacaaaacaaatccccattctttgttg 112  Q
    |||||||||||||| |||||| | || ||||||||||||||||||||||||   |||||||| | ||||||||||||    
T  31657883 tgttgctttaataacgtcatcatatgttatttttccatcataattccatatgtcaaacaaattctcattctttgttg 31657807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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