View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14638_low_16 (Length: 371)

Name: NF14638_low_16
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14638_low_16
NF14638_low_16
[»] chr6 (9 HSPs)
chr6 (93-248)||(21383714-21383873)
chr6 (315-368)||(21383593-21383646)
chr6 (156-202)||(21382549-21382595)
chr6 (93-143)||(12603938-12603988)
chr6 (157-202)||(26545808-26545853)
chr6 (94-143)||(26545871-26545920)
chr6 (93-143)||(32146094-32146145)
chr6 (93-131)||(25483414-25483452)
chr6 (93-145)||(6624254-6624305)
[»] chr7 (9 HSPs)
chr7 (93-248)||(21261981-21262141)
chr7 (315-368)||(21262209-21262262)
chr7 (156-202)||(21263260-21263306)
chr7 (93-143)||(5769308-5769359)
chr7 (93-145)||(6591270-6591322)
chr7 (93-143)||(19628184-19628234)
chr7 (156-202)||(47573157-47573203)
chr7 (156-197)||(19628126-19628167)
chr7 (156-201)||(23526709-23526754)
[»] chr4 (11 HSPs)
chr4 (156-248)||(1996951-1997044)
chr4 (315-368)||(1996830-1996883)
chr4 (90-143)||(56083352-56083405)
chr4 (156-202)||(1995935-1995981)
chr4 (95-143)||(47861936-47861984)
chr4 (93-143)||(1997060-1997111)
chr4 (93-144)||(12861413-12861464)
chr4 (93-143)||(16314203-16314254)
chr4 (93-143)||(23506385-23506436)
chr4 (93-139)||(44355419-44355465)
chr4 (93-144)||(20673566-20673618)
[»] chr5 (6 HSPs)
chr5 (18-92)||(9692327-9692401)
chr5 (157-248)||(7492926-7493018)
chr5 (156-202)||(27490168-27490214)
chr5 (87-242)||(27491175-27491333)
chr5 (93-143)||(12316349-12316399)
chr5 (93-144)||(27490100-27490152)
[»] chr1 (13 HSPs)
chr1 (156-248)||(48030131-48030223)
chr1 (93-145)||(9008762-9008814)
chr1 (95-204)||(43402266-43402375)
chr1 (156-202)||(35712520-35712566)
chr1 (156-202)||(35713636-35713682)
chr1 (157-245)||(13970018-13970105)
chr1 (93-143)||(17240718-17240769)
chr1 (93-131)||(48030251-48030289)
chr1 (93-143)||(51676338-51676388)
chr1 (93-143)||(21747944-21747995)
chr1 (93-143)||(21749290-21749340)
chr1 (24-76)||(2570815-2570867)
chr1 (93-145)||(49383023-49383075)
[»] chr8 (8 HSPs)
chr8 (168-248)||(44038915-44038994)
chr8 (93-144)||(14099746-14099797)
chr8 (93-143)||(38973754-38973804)
chr8 (93-143)||(39004852-39004902)
chr8 (93-143)||(9755685-9755736)
chr8 (93-143)||(42480899-42480949)
chr8 (87-124)||(3917791-3917828)
chr8 (168-237)||(44037681-44037750)
[»] chr3 (10 HSPs)
chr3 (90-203)||(39605581-39605693)
chr3 (93-142)||(13865958-13866006)
chr3 (93-143)||(42278457-42278508)
chr3 (91-145)||(42277230-42277284)
chr3 (24-92)||(3004206-3004274)
chr3 (93-143)||(36438775-36438826)
chr3 (93-144)||(48537853-48537903)
chr3 (93-142)||(11151596-11151646)
chr3 (156-202)||(34799932-34799978)
chr3 (156-202)||(34801332-34801378)
[»] chr2 (3 HSPs)
chr2 (93-199)||(29042337-29042444)
chr2 (26-73)||(33712919-33712966)
chr2 (93-145)||(30776467-30776520)
[»] scaffold0049 (1 HSPs)
scaffold0049 (93-145)||(3923-3975)
[»] scaffold0484 (1 HSPs)
scaffold0484 (93-144)||(11537-11588)
[»] scaffold0408 (1 HSPs)
scaffold0408 (93-142)||(10088-10136)
[»] scaffold0262 (1 HSPs)
scaffold0262 (93-144)||(4381-4433)


Alignment Details
Target: chr6 (Bit Score: 81; Significance: 5e-38; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 93 - 248
Target Start/End: Complemental strand, 21383873 - 21383714
Alignment:
Q  93 ggttaataggcttttaccccc-taccatttgggggtctttcggtataccccc-tgcnnnnnnnnn-cttggagattcccccttgtaaaatgtagattttt 189  Q
    ||||||||||||||||||||| | |||||| ||||||||| ||||||||||| |||          ||||||||||||||||||||||||||||||| ||    
T  21383873 ggttaataggcttttacccccctgccatttaggggtcttttggtatacccccctgcaaaaaaaaaacttggagattcccccttgtaaaatgtagattctt 21383774  T
Q  190 tggtttacacccc-cagtccatttgattggataaattagcttatgtggcacgctgatgtg 248  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  21383773 tggtttacaccccgcagtccatttgattggataaattagcttatgtggcgcgctgatgtg 21383714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 21383646 - 21383593
Alignment:
Q  315 taatactaaagatacgaaatatctaaaatacccctaagcattttcttcttctct 368  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  21383646 taatactaaagatgcgaaatacctaaaatacccctaagcattttcttcttctct 21383593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 21382549 - 21382595
Alignment:
Q  156 cttggagattcccccttgtaaaatgtagattttttggtttacacccc 202  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  21382549 cttggagattcccccttgtaaaatgtagattctttggtttacccccc 21382595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 12603938 - 12603988
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccc 143  Q
    |||||||||||||||||||||| ||||||||| |||||| ||| |||||||    
T  12603938 ggttaataggcttttaccccctgccatttgggagtcttttggtttaccccc 12603988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 26545853 - 26545808
Alignment:
Q  157 ttggagattcccccttgtaaaatgtagattttttggtttacacccc 202  Q
    |||||||||||||||||||||||  ||||| |||||||||||||||    
T  26545853 ttggagattcccccttgtaaaataaagattctttggtttacacccc 26545808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 26545920 - 26545871
Alignment:
Q  94 gttaataggcttttaccccctaccatttgggggtctttcggtataccccc 143  Q
    ||||||||||||||||||||| ||||||| |||||||| ||| |||||||    
T  26545920 gttaataggcttttaccccctgccatttgagggtcttttggtttaccccc 26545871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 32146145 - 32146094
Alignment:
Q  93 ggttaataggctttta-ccccctaccatttgggggtctttcggtataccccc 143  Q
    |||||||||||||||| |||||| |||||||||||||||| ||| |||||||    
T  32146145 ggttaataggcttttatccccctgccatttgggggtcttttggtttaccccc 32146094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 25483452 - 25483414
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtcttt 131  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  25483452 ggttaataggcttttaccccctgccatttgggagtcttt 25483414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 6624254 - 6624305
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccctg 145  Q
    |||||||||| ||||||||| | |||||||||| ||||| |||||||||||||    
T  6624254 ggttaataggtttttaccccttgccatttgggg-tcttttggtataccccctg 6624305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 93 - 248
Target Start/End: Original strand, 21261981 - 21262141
Alignment:
Q  93 ggttaataggcttttaccccc-taccatttgggggtctttcggtataccccc-tgcnnnnnnnnn--cttggagattcccccttgtaaaatgtagatttt 188  Q
    ||||||||||||||||||||| | |||||| ||||||||| ||||||||||| |||           ||||||||||||||||||||||||||||||| |    
T  21261981 ggttaataggcttttacccccctgccatttaggggtcttttggtatacccccctgcaaaaaaaaaaacttggagattcccccttgtaaaatgtagattct 21262080  T
Q  189 ttggtttacacccc-cagtccatttgattggataaattagcttatgtggcacgctgatgtg 248  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  21262081 ttggtttacaccccgcagtccatttgattggataaattagcttatgtggcgcgctgatgtg 21262141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 21262209 - 21262262
Alignment:
Q  315 taatactaaagatacgaaatatctaaaatacccctaagcattttcttcttctct 368  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  21262209 taatactaaagatgcgaaatacctaaaatacccctaagcattttcttcttctct 21262262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 21263306 - 21263260
Alignment:
Q  156 cttggagattcccccttgtaaaatgtagattttttggtttacacccc 202  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  21263306 cttggagattcccccttgtaaaatgtagattctttggtttacccccc 21263260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 5769359 - 5769308
Alignment:
Q  93 ggttaataggcttttaccccc-taccatttgggggtctttcggtataccccc 143  Q
    ||||||||||||||||||||| | |||||||||||||||| |||||||||||    
T  5769359 ggttaataggcttttacccccctgccatttgggggtcttttggtataccccc 5769308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 6591270 - 6591322
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccctg 145  Q
    |||||||||||||||||||||| |||||||| ||| ||| ||||||| |||||    
T  6591270 ggttaataggcttttaccccctgccatttggtggtattttggtatactccctg 6591322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 19628234 - 19628184
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccc 143  Q
    |||||||||| ||||||||||| ||||||||| |||||| ||| |||||||    
T  19628234 ggttaataggtttttaccccctgccatttgggagtcttttggtttaccccc 19628184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 47573157 - 47573203
Alignment:
Q  156 cttggagattcccccttgtaaaatgtagattttttggtttacacccc 202  Q
    |||||||||||  |||||||||||| |||||||||||||| ||||||    
T  47573157 cttggagattcttccttgtaaaatgaagattttttggtttgcacccc 47573203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 19628167 - 19628126
Alignment:
Q  156 cttggagattcccccttgtaaaatgtagattttttggtttac 197  Q
    ||||||||||||||||||||||||  ||||| ||||||||||    
T  19628167 cttggagattcccccttgtaaaataaagattatttggtttac 19628126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 23526754 - 23526709
Alignment:
Q  156 cttggagattcccccttgtaaaatgtagattttttggtttacaccc 201  Q
    ||||||||||||||| | ||||||| ||||| ||||||||||||||    
T  23526754 cttggagattcccccctataaaatgaagattctttggtttacaccc 23526709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 156 - 248
Target Start/End: Complemental strand, 1997044 - 1996951
Alignment:
Q  156 cttggagattcccccttgtaaaatgtagattttttggtttacaccccc-agtccatttgattggataaattagcttatgtggcacgctgatgtg 248  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  1997044 cttggagattcccccttgtaaaatgtagattctttggtttacaccccccagtccatttgattggataaattagcttatgtggcgcgctgatgtg 1996951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 1996883 - 1996830
Alignment:
Q  315 taatactaaagatacgaaatatctaaaatacccctaagcattttcttcttctct 368  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  1996883 taatactaaagatgcgaaatacctaaaatacccctaagcattttcttcttctct 1996830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 56083352 - 56083405
Alignment:
Q  90 aatggttaataggcttttaccccctaccatttgggggtctttcggtataccccc 143  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  56083352 aatggttaataggcttttaccccctgccatttgggggtcttttggtataccccc 56083405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 1995935 - 1995981
Alignment:
Q  156 cttggagattcccccttgtaaaatgtagattttttggtttacacccc 202  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  1995935 cttggagattcccccttgtaaaatgtagattctttggtttacccccc 1995981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 47861936 - 47861984
Alignment:
Q  95 ttaataggcttttaccccctaccatttgggggtctttcggtataccccc 143  Q
    |||||||||||||||||||| |||||||||||||||| ||| |||||||    
T  47861936 ttaataggcttttaccccctgccatttgggggtcttttggtttaccccc 47861984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 1997111 - 1997060
Alignment:
Q  93 ggttaataggcttttaccccc-taccatttgggggtctttcggtataccccc 143  Q
    ||||||||||||||||||||| | |||||| ||||||||| |||||||||||    
T  1997111 ggttaataggcttttacccccctgccatttaggggtcttttggtataccccc 1997060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 12861413 - 12861464
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccct 144  Q
    |||||||||||||||||||||| | |||||||||| ||| ||| ||||||||    
T  12861413 ggttaataggcttttaccccctgctatttgggggtgttttggtttaccccct 12861464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 16314254 - 16314203
Alignment:
Q  93 ggttaataggcttttaccccc-taccatttgggggtctttcggtataccccc 143  Q
    ||||||||||||||||||||| | |||||||||||||||| ||| |||||||    
T  16314254 ggttaataggcttttacccccctgccatttgggggtcttttggtttaccccc 16314203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 23506436 - 23506385
Alignment:
Q  93 ggttaataggcttttaccccc-taccatttgggggtctttcggtataccccc 143  Q
    ||||||||||||||||||||| | |||||||||||||||| ||| |||||||    
T  23506436 ggttaataggcttttacccccctgccatttgggggtcttttggtttaccccc 23506385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 44355465 - 44355419
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtatac 139  Q
    |||||||||| ||||||||||| |||||||| ||||||| |||||||    
T  44355465 ggttaataggtttttaccccctgccatttggaggtcttttggtatac 44355419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 20673566 - 20673618
Alignment:
Q  93 ggttaataggctttta-ccccctaccatttgggggtctttcggtataccccct 144  Q
    |||||||||||||||| |||||| ||||||||| |||||| ||| ||||||||    
T  20673566 ggttaataggcttttacccccctgccatttgggtgtcttttggtttaccccct 20673618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 9692327 - 9692401
Alignment:
Q  18 gattgtaccctaagagtttagctcctcatgttattctaaacataaacaaaagtatatgagagtaaatacatgaat 92  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9692327 gattgtaccctaagagtttagctcctcatgttattctaaacataaacaaaagtatatgagagtaaatatatgaat 9692401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 157 - 248
Target Start/End: Complemental strand, 7493018 - 7492926
Alignment:
Q  157 ttggagattcccccttgtaaaatgtagattttttggtttaca-cccccagtccatttgattggataaattagcttatgtggcacgctgatgtg 248  Q
    |||||||||||| ||||||||||||||||| ||||||| ||| ||||||  |||| | |||||||||||||||||| ||||| ||||||||||    
T  7493018 ttggagattccctcttgtaaaatgtagattctttggttcacatcccccaaaccatctcattggataaattagcttaggtggcgcgctgatgtg 7492926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 27490168 - 27490214
Alignment:
Q  156 cttggagattcccccttgtaaaatgtagattttttggtttacacccc 202  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  27490168 cttggagattcccccttgtaaaatgaagattctttggtttacacccc 27490214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 242
Target Start/End: Complemental strand, 27491333 - 27491175
Alignment:
Q  87 atgaatggttaataggcttttaccccctaccatttgggggtctttcggtatacccc-ct-gcnnnnnnnnncttggagattcccccttgtaaaatgtaga 184  Q
    ||||| |||||||||||||||||||||| | ||||||||| |||| |||| ||||| ||  |         |||||||||||||| |||||||||| |||    
T  27491333 atgaagggttaataggcttttaccccctgcaatttgggggacttttggtacacccctctatcaaaaaaaaacttggagattccccattgtaaaatgaaga 27491234  T
Q  185 ttttttggtttacacccc-cagtccatttgattggataaattagcttatgtggcacgct 242  Q
    || |||||||||||||||  |  |||| ||| ||||| ||| |||| ||||||||||||    
T  27491233 ttctttggtttacacccctgatgccatctgactggatcaatgagctgatgtggcacgct 27491175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 12316349 - 12316399
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccc 143  Q
    ||||||||||||||||| |||| |||||||| ||||||| |||||||||||    
T  12316349 ggttaataggcttttactccctgccatttggaggtcttttggtataccccc 12316399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 27490100 - 27490152
Alignment:
Q  93 ggttaataggcttttacc-ccctaccatttgggggtctttcggtataccccct 144  Q
    |||||||||||||||||| ||||  ||| ||||||||||| ||||||||||||    
T  27490100 ggttaataggcttttacctccctgtcatatgggggtcttttggtataccccct 27490152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 156 - 248
Target Start/End: Complemental strand, 48030223 - 48030131
Alignment:
Q  156 cttggagattcccccttgtaaaatgtagattttttggtttacacccccagtccatttgattggataaattagcttatgtggcacgctgatgtg 248  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||| |||||||||||| ||||||||||    
T  48030223 cttggagattctcccttataaaatgtagattctttggtttacacccccaggccatctgattggataaataagcttatgtggcgcgctgatgtg 48030131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 9008762 - 9008814
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccctg 145  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  9008762 ggttaataggcttttaccccctgccatttgggggtcttttggtataccccctg 9008814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 204
Target Start/End: Original strand, 43402266 - 43402375
Alignment:
Q  95 ttaataggcttttaccccctaccatttgggggtctttcggtataccccctgcnnnnnnnnncttggagattcccccttgtaaaatgtagattttttggtt 194  Q
    |||||||||||||||||||| |||||||||||||||| ||| ||||||||           ||||||||||||||  ||||||||  ||||| |||||||    
T  43402266 ttaataggcttttaccccctgccatttgggggtcttttggtttaccccctatgaaaaaaaacttggagattcccctatgtaaaataaagattctttggtt 43402365  T
Q  195 tacaccccca 204  Q
    ||||||||||    
T  43402366 tacaccccca 43402375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 35712520 - 35712566
Alignment:
Q  156 cttggagattcccccttgtaaaatgtagattttttggtttacacccc 202  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  35712520 cttggagattcccccttgtaaaatgaagattctttggtttacacccc 35712566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 35713682 - 35713636
Alignment:
Q  156 cttggagattcccccttgtaaaatgtagattttttggtttacacccc 202  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  35713682 cttggagattcccccttgtaaaatgaagattctttggtttacacccc 35713636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 245
Target Start/End: Original strand, 13970018 - 13970105
Alignment:
Q  157 ttggagattcccccttgtaaaatgtagattttttggtttacacccccagtccatttgattggataaattagcttatgtggcacgctgat 245  Q
    ||||||||||||||| |||||||| ||||| ||||||||| |||||||  |||| ||| ||||| ||| || | |||||||||||||||    
T  13970018 ttggagattccccct-gtaaaatgaagattctttggtttatacccccaaaccatatgactggattaatgagatgatgtggcacgctgat 13970105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 17240718 - 17240769
Alignment:
Q  93 ggttaataggcttttaccccc-taccatttgggggtctttcggtataccccc 143  Q
    ||||||||||||||||||||| | |||||||||||||||| |||||||||||    
T  17240718 ggttaataggcttttacccccctgccatttgggggtcttttggtataccccc 17240769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 48030289 - 48030251
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtcttt 131  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  48030289 ggttaataggcttttaccccctgccatttgggggtcttt 48030251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 51676388 - 51676338
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccc 143  Q
    ||||||||| |||||||||||| | |||||||||||||| |||||||||||    
T  51676388 ggttaatagacttttaccccctgctatttgggggtcttttggtataccccc 51676338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 21747944 - 21747995
Alignment:
Q  93 ggttaataggcttttaccccc-taccatttgggggtctttcggtataccccc 143  Q
    ||||||||||||||||||||| | |||||||||||||||| ||| |||||||    
T  21747944 ggttaataggcttttacccccctgccatttgggggtcttttggtttaccccc 21747995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 21749340 - 21749290
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccc 143  Q
    ||||||||||||||||||||||||||| || | |||||| ||| |||||||    
T  21749340 ggttaataggcttttaccccctaccatatgtgcgtcttttggtttaccccc 21749290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 2570867 - 2570815
Alignment:
Q  24 accctaagagtttagctcctcatgttattctaaacataaacaaaagtatatga 76  Q
    ||||||| | |||| || |||||||| ||||||||| ||||||||||||||||    
T  2570867 accctaaaaatttaactactcatgttgttctaaacaaaaacaaaagtatatga 2570815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 49383023 - 49383075
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccctg 145  Q
    ||||||||| |||||||||||| |||||| |||| |||| ||| |||||||||    
T  49383023 ggttaatagacttttaccccctgccatttaggggacttttggtttaccccctg 49383075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 44038994 - 44038915
Alignment:
Q  168 cccttgtaaaatgtagattttttggtttacacccccagtccatttgattggataaattagcttatgtggcacgctgatgtg 248  Q
    ||||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||| |||||||||    
T  44038994 cccttataaaatgtagattctttggtttacacccc-agaccatttgattggataaattagcttacgtggcatgctgatgtg 44038915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 14099746 - 14099797
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccct 144  Q
    |||||||||||||||||||||| |||||||||||||||| ||| ||||||||    
T  14099746 ggttaataggcttttaccccctgccatttgggggtcttttggtttaccccct 14099797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 38973754 - 38973804
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccc 143  Q
    |||||||||| ||||||||||| |||||||||||| ||| |||||||||||    
T  38973754 ggttaataggtttttaccccctgccatttgggggttttttggtataccccc 38973804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 39004852 - 39004902
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccc 143  Q
    |||||||||| ||||||||||| |||||||||||| ||| |||||||||||    
T  39004852 ggttaataggtttttaccccctgccatttgggggttttttggtataccccc 39004902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 9755685 - 9755736
Alignment:
Q  93 ggttaataggcttttaccccc-taccatttgggggtctttcggtataccccc 143  Q
    ||||||||| ||||||||||| | |||||||||||||||| |||||||||||    
T  9755685 ggttaatagacttttacccccctgccatttgggggtcttttggtataccccc 9755736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 42480899 - 42480949
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccc 143  Q
    |||||||||||||||||||||| |||||| ||||| ||| ||| |||||||    
T  42480899 ggttaataggcttttaccccctgccatttaggggttttttggtttaccccc 42480949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 3917791 - 3917828
Alignment:
Q  87 atgaatggttaataggcttttaccccctaccatttggg 124  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  3917791 atgaagggttaataggcttttaccccctgccatttggg 3917828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 44037681 - 44037750
Alignment:
Q  168 cccttgtaaaatgtagattttttggtttacacccccagtccatttgattggataaattagcttatgtggc 237  Q
    ||||||||||||||||||||||||||| || |||  ||  ||  ||| |||||||||||||||| |||||    
T  44037681 cccttgtaaaatgtagattttttggttcaccccctaaggtcacctgactggataaattagcttaagtggc 44037750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 203
Target Start/End: Original strand, 39605581 - 39605693
Alignment:
Q  90 aatggttaataggcttttaccccctaccatttgggggtctttcggtataccccctgcnnnnnnnnncttggagattcccccttgtaaaatgtagattttt 189  Q
    ||||||||||||||||||||||| | |||||||||||| ||| ||| ||||||   |         ||||||||||||||| ||||||||| ||||| ||    
T  39605581 aatggttaataggcttttacccc-tgccatttgggggttttttggtgtacccctgtcaaaaaaaaacttggagattcccccctgtaaaatgaagattctt 39605679  T
Q  190 tggtttacaccccc 203  Q
    ||||||||||||||    
T  39605680 tggtttacaccccc 39605693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 13866006 - 13865958
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtatacccc 142  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  13866006 ggttaataggcttttacccc-taccatttgggggtcttttggtatacccc 13865958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 42278508 - 42278457
Alignment:
Q  93 ggttaataggcttttaccccc-taccatttgggggtctttcggtataccccc 143  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| |||||||    
T  42278508 ggttaataggcttttacccccctaccatttgggggtcttttggtttaccccc 42278457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 42277230 - 42277284
Alignment:
Q  91 atggttaataggcttttaccccctaccatttgggggtctttcggtataccccctg 145  Q
    |||||||||||||||||||||||| |||||||||  | ||| |||||||||||||    
T  42277230 atggttaataggcttttaccccctgccatttgggttttttttggtataccccctg 42277284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 3004274 - 3004206
Alignment:
Q  24 accctaagagtttagctcctcatgttattctaaacataaacaaaagtatatgagagtaaatacatgaat 92  Q
    |||||| ||||||| || ||||||||||| |||||| ||| |||||||||||| |  ||||||||||||    
T  3004274 accctaggagtttaactactcatgttattttaaacaaaaataaaagtatatgaaaagaaatacatgaat 3004206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 36438826 - 36438775
Alignment:
Q  93 ggttaataggcttttaccccc-taccatttgggggtctttcggtataccccc 143  Q
    ||||||||||||||||||||| | |||||||||||||||| ||| |||||||    
T  36438826 ggttaataggcttttacccccctgccatttgggggtcttttggtttaccccc 36438775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 48537853 - 48537903
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccct 144  Q
    |||||||||||||||||||| | |||||||||||||||| ||| ||||||||    
T  48537853 ggttaataggcttttacccc-tgccatttgggggtcttttggtttaccccct 48537903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 11151646 - 11151596
Alignment:
Q  93 ggttaataggcttttaccccc-taccatttgggggtctttcggtatacccc 142  Q
    ||||||||||||||||||||| ||||||||||||| |||| ||| ||||||    
T  11151646 ggttaataggcttttacccccctaccatttgggggacttttggtttacccc 11151596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 34799932 - 34799978
Alignment:
Q  156 cttggagattcccccttgtaaaatgtagattttttggtttacacccc 202  Q
    |||||||||||||||||| |||||| ||||| |||||||||| ||||    
T  34799932 cttggagattcccccttgcaaaatgaagattctttggtttacccccc 34799978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 34801378 - 34801332
Alignment:
Q  156 cttggagattcccccttgtaaaatgtagattttttggtttacacccc 202  Q
    ||||||||||||||||||||||||  ||||| |||||||||| ||||    
T  34801378 cttggagattcccccttgtaaaataaagattctttggtttacccccc 34801332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 29042337 - 29042444
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccct-gcnnnnnnnnncttggagattcccccttgtaaaatgtagattttttg 191  Q
    |||||||||||||||||||||| | |||||||||||||| |||||||| |||            |||||||||||||||||| |||||| ||||| ||||    
T  29042337 ggttaataggcttttaccccctgctatttgggggtcttttggtatacctcctataaaaaaaaaacttggagattcccccttgaaaaatgaagattctttg 29042436  T
Q  192 gtttacac 199  Q
    ||||||||    
T  29042437 gtttacac 29042444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 33712919 - 33712966
Alignment:
Q  26 cctaagagtttagctcctcatgttattctaaacataaacaaaagtata 73  Q
    |||||||| |||| |  |||||||||||||||||||||||||||||||    
T  33712919 cctaagaggttagattgtcatgttattctaaacataaacaaaagtata 33712966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 30776467 - 30776520
Alignment:
Q  93 ggttaataggctttta-ccccctaccatttgggggtctttcggtataccccctg 145  Q
    |||||||||||||||| ||||||||||||||| || |||| |||| ||||||||    
T  30776467 ggttaataggcttttacccccctaccatttggaggacttttggtagaccccctg 30776520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 3975 - 3923
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccctg 145  Q
    |||||||||||||||||||||| ||||||||||| |||| ||| || ||||||    
T  3975 ggttaataggcttttaccccctgccatttgggggacttttggtttatcccctg 3923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 11537 - 11588
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtataccccct 144  Q
    |||||||||||||||||||||| ||||||||| |||||| ||  ||||||||    
T  11537 ggttaataggcttttaccccctgccatttgggagtcttttggattaccccct 11588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 10088 - 10136
Alignment:
Q  93 ggttaataggcttttaccccctaccatttgggggtctttcggtatacccc 142  Q
    |||||||||||||||||||| | |||||||||||||||| ||| ||||||    
T  10088 ggttaataggcttttacccc-tgccatttgggggtcttttggtttacccc 10136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 4433 - 4381
Alignment:
Q  93 ggttaataggcttttacccccta-ccatttgggggtctttcggtataccccct 144  Q
    |||||||||||||||| |||||  |||||||||||||||| ||| ||||||||    
T  4433 ggttaataggcttttatccccttgccatttgggggtcttttggtttaccccct 4381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University