View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14638_low_18 (Length: 355)
Name: NF14638_low_18
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_low_18 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr3 (17 HSPs) |
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|
Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 35141010 - 35140656
Alignment:
| Q |
1 |
aatatttagtcttgaaaacaaactctgatgcacgttggtggatatcttaaagtatttctcaccaacacttgttcttctaccatcaaattctttagtcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35141010 |
aatatttagtcttgaaaacaaactctgatgcacgttggtggatatcttaaagtatttctcaccaacacttgttcttctaccatcaaattctttagtcctt |
35140911 |
T |
|
| Q |
101 |
taatgttatgaatttgctttagttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacgtgtcctttgagggatatcttgcactttcacgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
35140910 |
taatgttatgaatttgctttagttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacatgtcctttgagggatatcttgcactttcacacc |
35140811 |
T |
|
| Q |
201 |
ctctattcgtaaccagaattctcctgaaattgatgtcactaaatcatggacataatcatgcatgatgaaatggtacttaccagcccagaatggcataaca |
300 |
Q |
| |
|
|||||||||||| | ||||||||| | |||||||||| |||||||| || | |||||||| |||||||| | ||||||||||||||||||||| || |
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|
| T |
35140810 |
ctctattcgtaagcgaaattctcctaacattgatgtcattaaatcattgataagatcatgcacgatgaaatagcacttaccagcccagaatggcagaatt |
35140711 |
T |
|
| Q |
301 |
gctgattgttggaaaaacgatattgacactagatcattgaataatttattaccca |
355 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
35140710 |
gctgatttttggaaaaacgacattgacactagatcattgaagaatttattaccca |
35140656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 5 - 355
Target Start/End: Original strand, 6258596 - 6258947
Alignment:
| Q |
5 |
tttagtcttgaaaacaaactctgatgcacgttggtggatatcttaaagtatttctcacca-acacttgttcttctaccatcaaattctttagtcctttaa |
103 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | |||||||||||||||||| | ||| ||||||||||| |
|
|
| T |
6258596 |
tttagtcttgaaaacaaactctgctgcacattggtggatatcttaaagcgtttctcaccatatccttgttcttctaccatcagactctgtagtcctttaa |
6258695 |
T |
|
| Q |
104 |
tgttatgaatttgctttagttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacgtgtcctttgagggatatcttgcactttcacgccctc |
203 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6258696 |
tgttatgaatctgctttagttttctatcaccatcttccaaatcaaggcggcaccaaatgtgacgtgtcctttgagggatatcttgcactttcacaccctc |
6258795 |
T |
|
| Q |
204 |
tattcgtaaccagaattctcctgaaattgatgtcactaaatcatggacataatcatgcatgatgaaatggtacttaccagcccagaatggcataacagct |
303 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||| ||||||||| || | ||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
6258796 |
tattcgtaagcagaattctcctgacattgatgtcgctaaatcattgataagatcatgcatgatgaaatagtacttaccagcccagaatggcataatcgct |
6258895 |
T |
|
| Q |
304 |
gattgttggaaaaacgatattgacactagatcattgaataatttattaccca |
355 |
Q |
| |
|
||| |||||||||| || |||||||||||||||||||| ||||||||||||| |
|
|
| T |
6258896 |
gatggttggaaaaaagacattgacactagatcattgaagaatttattaccca |
6258947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 29 - 355
Target Start/End: Original strand, 6244711 - 6245038
Alignment:
| Q |
29 |
tgcacgttggtggatatcttaaagtatttctcacca-acacttgttcttctaccatcaaattctttagtcctttaatgttatgaatttgctttagttttc |
127 |
Q |
| |
|
||||| |||||||||||||||||| ||| |||||| | ||||| |||||||||||| | || || |||||||||||||||||| ||||||||||||| |
|
|
| T |
6244711 |
tgcacattggtggatatcttaaagcgtttatcaccatagccttgtgcttctaccatcagactccgtactcctttaatgttatgaatctgctttagttttc |
6244810 |
T |
|
| Q |
128 |
tatcaccatcttccaaatcaaggcagcaccaaatgtgacgtgtcctttgagggatatcttgcactttcacgccctctattcgtaaccagaattctcctga |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
6244811 |
tatcaccatcttccaaatcaaggcagcaccaaatgtgacgtgtcctttgagggatatcttgcactttcacaccctctattcgtaagcagaattctcctga |
6244910 |
T |
|
| Q |
228 |
aattgatgtcactaaatcatggacataatcatgcatgatgaaatggtacttaccagcccagaatggcataacagctgattgttggaaaaacgatattgac |
327 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
6244911 |
cattgatgtcgctaaatcatggacaagatcatgcatgatgaaattgtacttaccagcccagaatggcataattgctgattgttggaaaaacgacattgac |
6245010 |
T |
|
| Q |
328 |
actagatcattgaataatttattaccca |
355 |
Q |
| |
|
|||||||||||||| ||||||||||||| |
|
|
| T |
6245011 |
actagatcattgaagaatttattaccca |
6245038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 355
Target Start/End: Complemental strand, 13271186 - 13270837
Alignment:
| Q |
7 |
tagtcttgaaaacaaactctgatgcacgttggtggatatcttaaagtatttctcacca-acacttgttcttctaccatcaaattctttagtcctttaatg |
105 |
Q |
| |
|
|||||||||| ||||| | | ||||| |||||||||||||||||| ||| |||||| | ||||| |||||||||||| | || ||||||||||||| |
|
|
| T |
13271186 |
tagtcttgaatacaaattatactgcacattggtggatatcttaaagcgtttatcaccatagccttgtgcttctaccatcagactccgtagtcctttaatg |
13271087 |
T |
|
| Q |
106 |
ttatgaatttgctttagttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacgtgtcctttgagggatatcttgcactttcacgccctcta |
205 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
13271086 |
ttatgaatctgctttagttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacgtgtcctttgagggatatattgcactttcacaccctcta |
13270987 |
T |
|
| Q |
206 |
ttcgtaaccagaattctcctgaaattgatgtcactaaatcatggacataatcatgcatgatgaaatggtacttaccagcccagaatggcataacagctga |
305 |
Q |
| |
|
||||||| |||||||| ||||| ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
13270986 |
ttcgtaagcagaattcccctgacattgatgtcgctaaatcatggacaagatcatgcatgatgaaatagtacttaccagcccagaatggcacaattgctga |
13270887 |
T |
|
| Q |
306 |
ttgttggaaaaacgatattgacactagatcattgaataatttattaccca |
355 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
13270886 |
ttgttggaaaaacgaaattgacactagatcattgaagaatttattaccca |
13270837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 68 - 355
Target Start/End: Original strand, 6168349 - 6168636
Alignment:
| Q |
68 |
cttgttcttctaccatcaaattctttagtcctttaatgttatgaatttgctttagttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacg |
167 |
Q |
| |
|
||||| |||||||||||| | ||| |||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6168349 |
cttgtgcttctaccatcagactctgtagtcctttaatgtcacgaatctgctttagttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacg |
6168448 |
T |
|
| Q |
168 |
tgtcctttgagggatatcttgcactttcacgccctctattcgtaaccagaattctcctgaaattgatgtcactaaatcatggacataatcatgcatgatg |
267 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||||||||| | ||||||||| | |||| || |||||||| | || ||||||||||||| |
|
|
| T |
6168449 |
tgtcctttgagggatatcttgcacgttatcaccctctattcgtaagtgggattctcctgtcaatgatttcgctaaatcactggcaagatcatgcatgatg |
6168548 |
T |
|
| Q |
268 |
aaatggtacttaccagcccagaatggcataacagctgattgttggaaaaacgatattgacactagatcattgaataatttattaccca |
355 |
Q |
| |
|
|||| ||||||||||||||| |||||||||| ||||||||||||||||| || ||||||||||||| || || |||| |||||||| |
|
|
| T |
6168549 |
aaatagtacttaccagcccataatggcataattgctgattgttggaaaaatgacattgacactagatgatcaaagaattcattaccca |
6168636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 5 - 355
Target Start/End: Complemental strand, 6591988 - 6591637
Alignment:
| Q |
5 |
tttagtcttgaaaacaaactctgatgcacgttggtggatatcttaaagtatttctcacca-acacttgttcttctaccatcaaattctttagtcctttaa |
103 |
Q |
| |
|
|||| ||||||||||||| | || ||||| ||||| |||||||||| ||| |||||| | ||||| |||||||||||| | | | ||||||||||| |
|
|
| T |
6591988 |
tttattcttgaaaacaaattatgctgcacactggtgcttatcttaaagcgtttttcaccatagccttgtgcttctaccatcagactgtgtagtcctttaa |
6591889 |
T |
|
| Q |
104 |
tgttatgaatttgctttagttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacgtgtcctttgagggatatcttgcactttcacgccctc |
203 |
Q |
| |
|
| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| || | ||||| |
|
|
| T |
6591888 |
ttttatgaatctgcttcagttttctatcaccatcttccaaatcaaggcagcaccaaatatgacgtgtcctattagggatatcttgcacgttgccaccctc |
6591789 |
T |
|
| Q |
204 |
tattcgtaaccagaattctcctgaaattgatgtcactaaatcatggacataatcatgcatgatgaaatggtacttaccagcccagaatggcataacagct |
303 |
Q |
| |
|
|||| ||| |||||||||||||| | |||| | ||||||||| |||| ||||||||||||||| | || ||| |||||||| ||||||||| || |
|
|
| T |
6591788 |
tatttctaagcagaattctcctgacactgattttgctaaatcattgacaagatcatgcatgatgaagtagtgcttgccagcccataatggcatagttact |
6591689 |
T |
|
| Q |
304 |
gattgttggaaaaacgatattgacactagatcattgaataatttattaccca |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |||| ||| |||| |
|
|
| T |
6591688 |
gattgttggaaaaacgatattgacactagatgattgaagaattcattgccca |
6591637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 68 - 353
Target Start/End: Original strand, 6141744 - 6142029
Alignment:
| Q |
68 |
cttgttcttctaccatcaaattctttagtcctttaatgttatgaatttgctttagttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacg |
167 |
Q |
| |
|
||||| |||||||||||| | ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6141744 |
cttgtgcttctaccatcagactctgtagtcctttaatgttatgaatatgctttagttttctatcaccatcttccaaatcaaggcaacaccaaatgtgacg |
6141843 |
T |
|
| Q |
168 |
tgtcctttgagggatatcttgcactttcacgccctctattcgtaaccagaattctcctgaaattgatgtcactaaatcatggacataatcatgcatgatg |
267 |
Q |
| |
|
|||||||| | |||||||||||| || | || || |||||||| | | |||||| || | |||| || ||||||||| |||| ||||||||| || |
|
|
| T |
6141844 |
tgtcctttcattgatatcttgcacgttatcaccttcgattcgtaagcgggattctcttgtcaatgatttcgctaaatcattgacaagatcatgcatagtg |
6141943 |
T |
|
| Q |
268 |
aaatggtacttaccagcccagaatggcataacagctgattgttggaaaaacgatattgacactagatcattgaataatttattacc |
353 |
Q |
| |
|
|| | ||||||||||| ||| |||||||||| |||||||||||||||| |||||||||||||||| || ||| |||| |||||| |
|
|
| T |
6141944 |
aagtagtacttaccagaccataatggcataattactgattgttggaaaaatgatattgacactagataatcgaagaattcattacc |
6142029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 68 - 355
Target Start/End: Original strand, 6916559 - 6916846
Alignment:
| Q |
68 |
cttgttcttctaccatcaaattctttagtcctttaatgttatgaatttgctttagttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacg |
167 |
Q |
| |
|
||||| |||||||||||| | | | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6916559 |
cttgtgcttctaccatcagactgtgtagtcctttaattttatgaatctgctttagttttctatcaccatcttccaaatcaaggcagcaccaaatatgacg |
6916658 |
T |
|
| Q |
168 |
tgtcctttgagggatatcttgcactttcacgccctctattcgtaaccagaattctcctgaaattgatgtcactaaatcatggacataatcatgcatgatg |
267 |
Q |
| |
|
|||||||| ||||||||||||||| || | | ||||||||| || | ||||||||| || | |||| | ||||||||| |||| ||||||||||| |
|
|
| T |
6916659 |
tgtccttttagggatatcttgcacgttttcactctctattcggaagcggaattctcccgacactgattttgctaaatcattgacaagatcatgcatgaca |
6916758 |
T |
|
| Q |
268 |
aaatggtacttaccagcccagaatggcataacagctgattgttggaaaaacgatattgacactagatcattgaataatttattaccca |
355 |
Q |
| |
|
|| | || |||||| ||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
6916759 |
aagtagtgcttacctgcccatcgtggcataattactgatcgttggaaaaatgatattgacactagatcattgaaaaattcattaccca |
6916846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 94 - 355
Target Start/End: Original strand, 7749486 - 7749747
Alignment:
| Q |
94 |
agtcctttaatgttatgaatttgctttagttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacgtgtcctttgagggatatcttgcactt |
193 |
Q |
| |
|
||||| ||||| |||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| | |
|
|
| T |
7749486 |
agtcccttaattttatgaatatgatctagttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacgcgtccttttagggatttcttgcacat |
7749585 |
T |
|
| Q |
194 |
tcacgccctctattcgtaaccagaattctcctgaaattgatgtcactaaatcatggacataatcatgcatgatgaaatggtacttaccagcccagaatgg |
293 |
Q |
| |
|
| | ||||||||| ||| ||||||||||| || | |||| | ||||||||| |||| ||| | ||||||||| | ||| ||||||||||| || || |
|
|
| T |
7749586 |
taccatcctctattcttaagcagaattctcccgacactgattttgctaaatcattgacaagatcgttcatgatgaagtagtatttaccagcccataaagg |
7749685 |
T |
|
| Q |
294 |
cataacagctgattgttggaaaaacgatattgacactagatcattgaataatttattaccca |
355 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||| |||| |||||||| |
|
|
| T |
7749686 |
catagttactgattgttggaaaaacgatattgacactagataattgaagaattcattaccca |
7749747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 68 - 355
Target Start/End: Original strand, 6899546 - 6899833
Alignment:
| Q |
68 |
cttgttcttctaccatcaaattctttagtcctttaatgttatgaatttgctttagttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacg |
167 |
Q |
| |
|
||||| |||||||||||| | | | |||||| ||||| ||| |||| |||| |||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
6899546 |
cttgtgcttctaccatcagactgtgtagtcccttaattttaagaatatgctctagttttctatcaccatcttccaaatcaaggcagcaccaaatctggcg |
6899645 |
T |
|
| Q |
168 |
tgtcctttgagggatatcttgcactttcacgccctctattcgtaaccagaattctcctgaaattgatgtcactaaatcatggacataatcatgcatgatg |
267 |
Q |
| |
|
||||||| |||||||||||||| || | |||||||||| ||| | ||||||||||| | | || || ||||||||| ||| ||||||||||||| |
|
|
| T |
6899646 |
cgtcctttcagggatatcttgcaggttatcaccctctattcttaagcgaaattctcctgacactaatttcgctaaatcatatacaagatcatgcatgatg |
6899745 |
T |
|
| Q |
268 |
aaatggtacttaccagcccagaatggcataacagctgattgttggaaaaacgatattgacactagatcattgaataatttattaccca |
355 |
Q |
| |
|
|| | ||| ||||||||||| |||||||||| | |||||| |||||||| | ||||||||||||||| ||||| |||| |||||||| |
|
|
| T |
6899746 |
aagtagtatttaccagcccataatggcataattgttgattgctggaaaaatgttattgacactagatcgttgaagaattcattaccca |
6899833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 120 - 332
Target Start/End: Original strand, 6265195 - 6265413
Alignment:
| Q |
120 |
tagttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacgtgtcctttgagggatatcttgcactttcacgccctctattcgt------aac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| ||||||| || || | |||||||||||| || |
|
|
| T |
6265195 |
tagttttctatcaccatcttccaaatcaaggcagcaccatacgtgacgtgtccttttaggtatatctttcatgttatcaccctctattcgtattcgcaat |
6265294 |
T |
|
| Q |
214 |
cagaattctcctgaaattgatgtcactaaatcatggacataatcatgcatgatgaaatggtacttaccagcccagaatggcataacagctgattgttgga |
313 |
Q |
| |
|
| ||| |||||||| | |||| || ||||||||| |||| |||||||||||| || | | ||||||| | ||| |||||||| | |||||||||||| |
|
|
| T |
6265295 |
cggaactctcctgacactgatttcgctaaatcattgacaagatcatgcatgataaagtagcacttaccggtccataatggcatcaatactgattgttgga |
6265394 |
T |
|
| Q |
314 |
aaaacgatattgacactag |
332 |
Q |
| |
|
|||| || ||||||||||| |
|
|
| T |
6265395 |
aaaatgacattgacactag |
6265413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 6722609 - 6722491
Alignment:
| Q |
109 |
tgaatttgctttagttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacgtgtcctttgagggatatcttgcactttcacgccctctattc |
208 |
Q |
| |
|
||||| |||| ||||||||| |||||||| | ||||||||||||||||||||||| ||||||||||| | |||||||||||| || | || ||||| | |
|
|
| T |
6722609 |
tgaatatgctctagttttctgtcaccatccttcaaatcaaggcagcaccaaatgttacgtgtcctttctgagatatcttgcacattttcaccttctatac |
6722510 |
T |
|
| Q |
209 |
gtaaccagaattctcctga |
227 |
Q |
| |
|
| || |||||||||||||| |
|
|
| T |
6722509 |
ggaaacagaattctcctga |
6722491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 6882026 - 6882070
Alignment:
| Q |
120 |
tagttttctatcaccatcttccaaatcaaggcagcaccaaatgtg |
164 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6882026 |
tagttttctatcaccatcttcaaaatcaaggcagcaccaaatgtg |
6882070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 353
Target Start/End: Original strand, 6882123 - 6882247
Alignment:
| Q |
229 |
attgatgtcactaaatcatggacataatcatgcatgatgaaatggtacttaccagcccagaatggcataacagctgattgttggaaaaacgatattgaca |
328 |
Q |
| |
|
|||||| || ||||||||| |||| ||||||||||| ||| | ||| || ||||||| |||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
6882123 |
attgatttcgctaaatcattgacaagatcatgcatgacgaagtagtatttgtcagcccataatggcataattactgattgttggaaaaaagatattgaca |
6882222 |
T |
|
| Q |
329 |
ctagatcattgaataatttattacc |
353 |
Q |
| |
|
| | || |||||| |||| |||||| |
|
|
| T |
6882223 |
ccaaatgattgaagaattcattacc |
6882247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 5298236 - 5298297
Alignment:
| Q |
128 |
tatcaccatcttccaaatcaaggcagcaccaaatgtgacgtgtcctttgagggatatcttgc |
189 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
5298236 |
tatcaccatcttttaattcaagagagcaccaaatgtgacgtgtcctttcaggaatatcttgc |
5298297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 265
Target Start/End: Original strand, 5280166 - 5280308
Alignment:
| Q |
123 |
ttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacgtgtcctttgagggatatcttgcactttcacgccctctattcgtaaccagaattct |
222 |
Q |
| |
|
|||||||| ||||| || | ||||||| |||||||||| || |||| |||| ||||||||||||||| | | |||||||||||||| | |||||| |
|
|
| T |
5280166 |
ttttctataaccatatttccaatcaagagagcaccaaatatggcgtgctctttcagggatatcttgcaccctatcaccctctattcgtaaagaaaattct |
5280265 |
T |
|
| Q |
223 |
cctgaaattgatgtcactaaatcatggacataatcatgcatga |
265 |
Q |
| |
|
||||| | |||| | |||||||| |||| ||||||||||| |
|
|
| T |
5280266 |
cctgacactgatcttgctaaatcaatgacaagatcatgcatga |
5280308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 8471047 - 8471132
Alignment:
| Q |
106 |
ttatgaatttgctttagttttctatcaccatcttccaaatcaaggcagcaccaaatgtgacgtgtcctttgagggatatcttgcac |
191 |
Q |
| |
|
|||| ||| ||||||| | ||||| ||||||||| ||||||||| | || |||||||||||||| |||| || ||||||||||| |
|
|
| T |
8471047 |
ttataaatctgctttaatattctagcaccatctttcaaatcaagataacagcaaatgtgacgtgttctttcagatatatcttgcac |
8471132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 5267724 - 5267776
Alignment:
| Q |
303 |
tgattgttggaaaaacgatattgacactagatcattgaataatttattaccca |
355 |
Q |
| |
|
|||||| |||||||| || |||||||||||||||| ||||||| |||||||| |
|
|
| T |
5267724 |
tgattgctggaaaaatgaaattgacactagatcatctaataattgattaccca |
5267776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 6573828 - 6573762
Alignment:
| Q |
125 |
ttctatcaccatcttccaaatcaaggcagcaccaaatgtgacgtgtcctttgagggatatcttgcac |
191 |
Q |
| |
|
||||| |||||||||||||| ||||| |||||||||| ||||||||||||| || ||||||||||| |
|
|
| T |
6573828 |
ttctagcaccatcttccaaaccaagggagcaccaaatatgacgtgtcctttcagatatatcttgcac |
6573762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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