View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14638_low_2 (Length: 540)
Name: NF14638_low_2
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 65 - 270
Target Start/End: Original strand, 9026877 - 9027085
Alignment:
| Q |
65 |
tataccatcatgaactaaaaataattcagggcttaaaacaaatataccattggaacttagttttaggtggatatggggttttctgataatgatatataga |
164 |
Q |
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| T |
9026877 |
tataccatcatgaactaaaaataattcagggcttaaaacaaatctaccattggaacttagttttaggtggatatggggttttctgataatgatatataga |
9026976 |
T |
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| Q |
165 |
aatgagtggattaaaatgtagaaacgtattattaggtttatgtttgtaatt---ataatcacagaaaaaagatagggggtatacatcgaatttccatgtg |
261 |
Q |
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| T |
9026977 |
aatgagtggattaaaatgtagaaacgtattattaggtttatgtttgtaattataataatcacagaaaaaagatagggggtatacatcgaatttccatgtg |
9027076 |
T |
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| Q |
262 |
ctgataaag |
270 |
Q |
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| T |
9027077 |
ctgataaag |
9027085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 376 - 540
Target Start/End: Original strand, 9027187 - 9027346
Alignment:
| Q |
376 |
gagggaccatatcatattatatgattagccatacatttgcaaaacatgaagtagtgataaaatgtatatagattaattaaacaatgtatgtctttatcaa |
475 |
Q |
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| T |
9027187 |
gagggaccatatcatattatatgattagccatacatttgcaaaacatgaaatagtgataaaatgtatatagattaattaaacaatgtatgtctttatcaa |
9027286 |
T |
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| Q |
476 |
gacaaagacaaattaaagttgtcgagatttgtttgttctttacctttatgagcgtgcttcctctt |
540 |
Q |
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| T |
9027287 |
aacaaagac-----aaagttgtcgagatttgtttgttttttacctttatgagcgtgcttcctctt |
9027346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 9026828 - 9026858
Alignment:
| Q |
17 |
actgcatgccctaatctataacacacgacat |
47 |
Q |
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| T |
9026828 |
actgcatgccctaatctataacacacgacat |
9026858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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