View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14638_low_20 (Length: 315)
Name: NF14638_low_20
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 36201408 - 36201155
Alignment:
| Q |
1 |
caatatcaaccaagattatcatacatacttagagtagaaaatagatcatgccaactagtataacactaaactggaaaagttcaaaattcgtgttaactca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36201408 |
caatatcaaccaagattatcatacatacttagagtagaaaatagatcatgccaactagtataacactaaactggaaaagttcaaaattcgtgttaactca |
36201309 |
T |
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| Q |
101 |
tttatattcattacgtcacaatcacttccgtaaataatgaaaatactcattaattcaattaatgcattaaattttatgtaacggttcactactatgctat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36201308 |
tttatattcattacgtcacaatcacttccgtaaataatgaaaatactcattaattcaattaatgcattaaattttatgtaacggttcactattatgctat |
36201209 |
T |
|
| Q |
201 |
gatgagtcagtatactttatctgaatgcttttgatatcaatcaaacgggaaagg |
254 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36201208 |
gatgagtcagtatactttatctgaatgcttttaatatcaatcaaacgggaaagg |
36201155 |
T |
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