View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14638_low_21 (Length: 308)
Name: NF14638_low_21
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 41 - 258
Target Start/End: Complemental strand, 37122915 - 37122701
Alignment:
| Q |
41 |
ttaggttccacaattttttctcttgactaaaatatatctttattgattaatttcataatatgcaacattt-ctttttctaacttcannnnnnnnnnnggt |
139 |
Q |
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| T |
37122915 |
ttaggttccacaattttttctcatgactaaaatatatctttattgattaatttcataatatgcaacatttactttttctaacttcatttttttttt---t |
37122819 |
T |
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| Q |
140 |
gacaaattttccaacaaattcttaataacaccggattctgctgcctgcgtttttaatctttcatttatttgttttgtgggaaactgatattttactacca |
239 |
Q |
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| T |
37122818 |
gacattttttccaacaaattct-aataacaccggattctggtgcctgcgtttttaatctttcatttatttgttttgtgggaaactgatattttactacca |
37122720 |
T |
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| Q |
240 |
ttaaattcactaatgtttt |
258 |
Q |
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| T |
37122719 |
ttaaattcactaatgtttt |
37122701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 242 - 301
Target Start/End: Complemental strand, 37122688 - 37122629
Alignment:
| Q |
242 |
aaattcactaatgttttgtatagttatcttttttattatggtataatatcctgttaattc |
301 |
Q |
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| T |
37122688 |
aaattcactaatgttttgtatagttatcttttttattatggtataatatcctgttaattc |
37122629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 293
Target Start/End: Complemental strand, 37112603 - 37112446
Alignment:
| Q |
141 |
acaaattttccaacaaattcttaataacaccggattctgctgcctgcgtttttaatctttcatttatttgttttgtgggaaactgatattttactaccat |
240 |
Q |
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| T |
37112603 |
acaatttttctaacgaattcttaataactctggattctgctacctgcgttttaaaccttttgtctatttgtttcgtgggaaaccgatactttactaccat |
37112504 |
T |
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| Q |
241 |
----taa-attcactaatgttttgtatagttatcttttttattatggtataatatcct |
293 |
Q |
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| T |
37112503 |
aagataatattcacttgtgttttgtatagttttaattttgattctggtacaatatcct |
37112446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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