View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14638_low_26 (Length: 261)

Name: NF14638_low_26
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14638_low_26
NF14638_low_26
[»] chr1 (6 HSPs)
chr1 (20-245)||(38487778-38488003)
chr1 (188-236)||(28308444-28308492)
chr1 (190-241)||(36472659-36472710)
chr1 (189-220)||(39596452-39596483)
chr1 (185-220)||(49294532-49294567)
chr1 (186-238)||(11098944-11098996)
[»] chr7 (6 HSPs)
chr7 (186-238)||(12272484-12272536)
chr7 (186-241)||(33084964-33085019)
chr7 (196-236)||(2600319-2600359)
chr7 (188-238)||(42713578-42713628)
chr7 (186-224)||(46976970-46977008)
chr7 (186-226)||(32002159-32002199)
[»] chr4 (8 HSPs)
chr4 (189-241)||(2097082-2097134)
chr4 (186-234)||(29728814-29728862)
chr4 (194-238)||(38020376-38020420)
chr4 (187-235)||(38450695-38450743)
chr4 (186-241)||(8456800-8456855)
chr4 (189-224)||(17431507-17431542)
chr4 (186-237)||(30979818-30979869)
chr4 (184-225)||(31703605-31703646)
[»] chr5 (3 HSPs)
chr5 (190-241)||(10635356-10635407)
chr5 (185-241)||(6296847-6296903)
chr5 (189-239)||(29814974-29815024)
[»] chr2 (4 HSPs)
chr2 (193-238)||(14195202-14195247)
chr2 (186-237)||(10429896-10429947)
chr2 (186-241)||(26009785-26009840)
chr2 (193-245)||(19535996-19536047)
[»] chr8 (7 HSPs)
chr8 (190-237)||(5431627-5431674)
chr8 (190-237)||(18068081-18068128)
chr8 (190-237)||(18069278-18069325)
chr8 (186-237)||(34453789-34453840)
chr8 (188-241)||(14239280-14239333)
chr8 (187-232)||(36665302-36665347)
chr8 (201-241)||(12020069-12020109)
[»] chr6 (1 HSPs)
chr6 (193-237)||(21537469-21537513)
[»] chr3 (1 HSPs)
chr3 (189-237)||(42529433-42529481)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 38488003 - 38487778
Alignment:
Q  20 ctctgttccttttatagtgtttttggaatctattctttccaaatttaaatgttttctgaaatgtatcttacttgagtaaattttcaattttcactcaagt 119  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38488003 ctctgttccttttctagtgtttttggaatctattctttccaaatttaaatgttttctgaaatgtatcttacttgagtaaattttcaattttcactcaagt 38487904  T
Q  120 ttcccttagctttgtaatctcatgatgttaaaatgtgttaaactgatcaatgcttctacgatttttgggggttgggtagctcaactgatttgagttaagg 219  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38487903 ttcccttagctttgtaatctcatgatgttaaaatgtgttaaattgatcaatggttctacgatttttgggggttgggtagctcaactgatttgagttaagg 38487804  T
Q  220 gttaaggagatggaggtcctggttca 245  Q
    ||||||||||||||||||||||||||    
T  38487803 gttaaggagatggaggtcctggttca 38487778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 28308492 - 28308444
Alignment:
Q  188 gggttgggtagctcaactgatttgagttaagggttaaggagatggaggt 236  Q
    |||||||||||||||||| ||||||| |||||| ||| |||||||||||    
T  28308492 gggttgggtagctcaactaatttgagctaagggataaagagatggaggt 28308444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 36472710 - 36472659
Alignment:
Q  190 gttgggtagctcaactgatttgagttaagggttaaggagatggaggtcctgg 241  Q
    ||||||||||||||||| | |||| |||||| ||||||| ||||||||||||    
T  36472710 gttgggtagctcaactggtctgagctaagggataaggagttggaggtcctgg 36472659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 220
Target Start/End: Complemental strand, 39596483 - 39596452
Alignment:
Q  189 ggttgggtagctcaactgatttgagttaaggg 220  Q
    ||||||||||||||||||||||||||||||||    
T  39596483 ggttgggtagctcaactgatttgagttaaggg 39596452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 49294532 - 49294567
Alignment:
Q  185 tgggggttgggtagctcaactgatttgagttaaggg 220  Q
    |||||||||||||||||||||| |||||||||||||    
T  49294532 tgggggttgggtagctcaactggtttgagttaaggg 49294567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 11098944 - 11098996
Alignment:
Q  186 gggggttgggtagctcaactgatttgagttaagggttaaggagatggaggtcc 238  Q
    ||||||||||||||||| | | |||||| |||||||||||||| |||| ||||    
T  11098944 gggggttgggtagctcagcaggtttgagctaagggttaaggagttggaagtcc 11098996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 12272536 - 12272484
Alignment:
Q  186 gggggttgggtagctcaactgatttgagttaagggttaaggagatggaggtcc 238  Q
    |||||||||||| |||||||| |||||||||| |||||||||| |||||||||    
T  12272536 gggggttgggtaactcaactggtttgagttaatggttaaggagttggaggtcc 12272484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 33085019 - 33084964
Alignment:
Q  186 gggggttgggtagctcaactgatttgagttaagggttaaggagatggaggtcctgg 241  Q
    ||||||||||||||||||||| |||||| |||||| || |||| ||||||||||||    
T  33085019 gggggttgggtagctcaactggtttgagctaagggatatggagttggaggtcctgg 33084964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 2600319 - 2600359
Alignment:
Q  196 tagctcaactgatttgagttaagggttaaggagatggaggt 236  Q
    ||||||||||| ||||||||| |||||||||||||||||||    
T  2600319 tagctcaactggtttgagttatgggttaaggagatggaggt 2600359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 42713578 - 42713628
Alignment:
Q  188 gggttgggtagctcaactgatttgagttaagggttaaggagatggaggtcc 238  Q
    |||||||| ||||||||||||||||| |||||||||| ||| | |||||||    
T  42713578 gggttgggcagctcaactgatttgagctaagggttaacgagttagaggtcc 42713628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 46977008 - 46976970
Alignment:
Q  186 gggggttgggtagctcaactgatttgagttaagggttaa 224  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  46977008 gggggttgggtagctcaactggtttgagctaagggttaa 46976970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 32002199 - 32002159
Alignment:
Q  186 gggggttgggtagctcaactgatttgagttaagggttaagg 226  Q
    ||||||||| ||||||||||| |||||| ||||||||||||    
T  32002199 gggggttggttagctcaactggtttgagctaagggttaagg 32002159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 2097082 - 2097134
Alignment:
Q  189 ggttgggtagctcaactgatttgagttaagggttaaggagatggaggtcctgg 241  Q
    |||||||||||||||||  |||||| |||||||||||||| ||||||||||||    
T  2097082 ggttgggtagctcaactagtttgagctaagggttaaggagttggaggtcctgg 2097134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 29728862 - 29728814
Alignment:
Q  186 gggggttgggtagctcaactgatttgagttaagggttaaggagatggag 234  Q
    ||||||||||||||||||||| |||||| |||||||||||||| |||||    
T  29728862 gggggttgggtagctcaactggtttgagctaagggttaaggagttggag 29728814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 38020376 - 38020420
Alignment:
Q  194 ggtagctcaactgatttgagttaagggttaaggagatggaggtcc 238  Q
    ||||||||||||| |||||| |||||||||||||| |||||||||    
T  38020376 ggtagctcaactggtttgagctaagggttaaggagttggaggtcc 38020420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 38450695 - 38450743
Alignment:
Q  187 ggggttgggtagctcaactgatttgagttaagggttaaggagatggagg 235  Q
    |||||||||||||||||||| |||||| ||||||||||| || ||||||    
T  38450695 ggggttgggtagctcaactggtttgagctaagggttaagaagttggagg 38450743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 8456800 - 8456855
Alignment:
Q  186 gggggttgggtagctcaactgatttgagttaagggttaaggagatggaggtcctgg 241  Q
    |||| |||||||||||||||| |||||| |||||| ||||||| |||| |||||||    
T  8456800 ggggcttgggtagctcaactggtttgagctaagggataaggagttggatgtcctgg 8456855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 17431507 - 17431542
Alignment:
Q  189 ggttgggtagctcaactgatttgagttaagggttaa 224  Q
    ||||||||||||||||||||||||||||| ||||||    
T  17431507 ggttgggtagctcaactgatttgagttaaaggttaa 17431542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 30979818 - 30979869
Alignment:
Q  186 gggggttgggtagctcaactgatttgagttaagggttaaggagatggaggtc 237  Q
    |||| |||||||||||||||| |||||| |||||| ||||||| ||||||||    
T  30979818 ggggattgggtagctcaactggtttgagctaagggataaggagttggaggtc 30979869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 31703646 - 31703605
Alignment:
Q  184 ttgggggttgggtagctcaactgatttgagttaagggttaag 225  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  31703646 ttgggggttgagtagctcaactgctttgagttaagagttaag 31703605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 10635407 - 10635356
Alignment:
Q  190 gttgggtagctcaactgatttgagttaagggttaaggagatggaggtcctgg 241  Q
    ||||||||||||||||| |||||| |||||| ||||||| ||||||||||||    
T  10635407 gttgggtagctcaactggtttgagctaagggataaggagttggaggtcctgg 10635356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 6296847 - 6296903
Alignment:
Q  185 tgggggttgggtagctcaactgatttgagttaagggttaaggagatggaggtcctgg 241  Q
    ||||||||||||||||||| || |||||| |||||| ||||||| ||||||| ||||    
T  6296847 tgggggttgggtagctcaattggtttgagctaagggataaggagttggaggttctgg 6296903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 29815024 - 29814974
Alignment:
Q  189 ggttgggtagctcaactgatttgagttaagggttaaggagatggaggtcct 239  Q
    ||||||||||||||| || |||||| |||||| ||||||| ||||||||||    
T  29815024 ggttgggtagctcaattggtttgagctaagggataaggagttggaggtcct 29814974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 14195247 - 14195202
Alignment:
Q  193 gggtagctcaactgatttgagttaagggttaaggagatggaggtcc 238  Q
    |||||||||||||| |||||| |||||||||||||| |||||||||    
T  14195247 gggtagctcaactggtttgagctaagggttaaggagttggaggtcc 14195202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 10429947 - 10429896
Alignment:
Q  186 gggggttgggtagctcaactgatttgagttaagggttaaggagatggaggtc 237  Q
    ||||||||||||||||||||| |||||| |||||| |||||||  |||||||    
T  10429947 gggggttgggtagctcaactggtttgagctaagggataaggagtaggaggtc 10429896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 241
Target Start/End: Original strand, 26009785 - 26009840
Alignment:
Q  186 gggggttgggtagctcaactgatttgagttaagggttaaggagatggaggtcctgg 241  Q
    ||||||||||||||||||||| ||||||  ||||| ||| ||| ||||||||||||    
T  26009785 gggggttgggtagctcaactggtttgagccaagggataaagagttggaggtcctgg 26009840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 19535996 - 19536047
Alignment:
Q  193 gggtagctcaactgatttgagttaagggttaaggagatggaggtcctggttca 245  Q
    |||||||||||||| |||| ||||||||||||| |||| |||||||| |||||    
T  19535996 gggtagctcaactg-tttgtgttaagggttaagaagatagaggtcctagttca 19536047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 5431627 - 5431674
Alignment:
Q  190 gttgggtagctcaactgatttgagttaagggttaaggagatggaggtc 237  Q
    ||||||||||||| |||||||||| |||||| ||||||| ||||||||    
T  5431627 gttgggtagctcagctgatttgagctaagggataaggagttggaggtc 5431674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 18068081 - 18068128
Alignment:
Q  190 gttgggtagctcaactgatttgagttaagggttaaggagatggaggtc 237  Q
    ||||||||||||||||||||| ||||||||| ||||||| || |||||    
T  18068081 gttgggtagctcaactgatttaagttaagggataaggagttgaaggtc 18068128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 237
Target Start/End: Original strand, 18069278 - 18069325
Alignment:
Q  190 gttgggtagctcaactgatttgagttaagggttaaggagatggaggtc 237  Q
    |||||||||||||| |||||||||||||||| ||||||| || |||||    
T  18069278 gttgggtagctcaattgatttgagttaagggataaggagttgaaggtc 18069325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 34453840 - 34453789
Alignment:
Q  186 gggggttgggtagctcaactgatttgagttaagggttaaggagatggaggtc 237  Q
    |||||||||||||| |||||||| ||||||||||| |||||||  |||||||    
T  34453840 gggggttgggtagcacaactgatatgagttaagggataaggagtaggaggtc 34453789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 14239333 - 14239280
Alignment:
Q  188 gggttgggtagctcaactgatttgagttaagggttaaggagatggaggtcctgg 241  Q
    ||||||||||||||||||| | |||| || ||| ||||||| ||||||||||||    
T  14239333 gggttgggtagctcaactggtctgagctaggggataaggagttggaggtcctgg 14239280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 36665347 - 36665302
Alignment:
Q  187 ggggttgggtagctcaactgatttgagttaagggttaaggagatgg 232  Q
    |||||||||||||| ||||| |||||| ||||||||||| ||||||    
T  36665347 ggggttgggtagcttaactggtttgagctaagggttaagtagatgg 36665302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 12020069 - 12020109
Alignment:
Q  201 caactgatttgagttaagggttaaggagatggaggtcctgg 241  Q
    |||||| ||||||||||||| ||||||| ||||||||||||    
T  12020069 caactggtttgagttaagggataaggagttggaggtcctgg 12020109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 21537469 - 21537513
Alignment:
Q  193 gggtagctcaactgatttgagttaagggttaaggagatggaggtc 237  Q
    |||||||||||||  |||||| |||||||||||||| ||||||||    
T  21537469 gggtagctcaactagtttgagctaagggttaaggagttggaggtc 21537513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 42529433 - 42529481
Alignment:
Q  189 ggttgggtagctcaactgatttgagttaagggttaaggagatggaggtc 237  Q
    |||||||||||||| ||| |||||| |||||| ||||||| ||||||||    
T  42529433 ggttgggtagctcagctggtttgagctaagggataaggagttggaggtc 42529481  T

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