View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14638_low_27 (Length: 255)
Name: NF14638_low_27
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_low_27 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 30957711 - 30957966
Alignment:
| Q |
1 |
catatagtaaggaaggaagaaattatcataatataacaataggacaaaatgaaaagaataatgaagggaggggaagggataattcaagattaactcatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30957711 |
catatagtaaggaaggaagaaattatcataatataacaataggacaaaatgaaaagaataatgaagggaggggaagggataattcaagattaactcatga |
30957810 |
T |
|
| Q |
101 |
agcacggttgtcctatagtaagtaaattaaaaacacaaaaatatcccttgaccgattcttcacatag-nnnnnnnnttagggcacatgnnnnnnnattga |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
30957811 |
agcacggttgtcctatagtaagtaaattaaaaacacaaaaatatcccttgaccgattcttcacatagaaaaaaaaattagggcacatgtttttttattga |
30957910 |
T |
|
| Q |
200 |
aaaatcggtatccgctctaatgatcgattgatttgtggattgaagttcagcttccc |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30957911 |
aaaatcggtatccgctctaatgatcgattgatttgtggattgaagttcagcttccc |
30957966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University