View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14638_low_33 (Length: 227)
Name: NF14638_low_33
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_low_33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 38090652 - 38090872
Alignment:
| Q |
7 |
taattataaattatattgctcttttgttgttgcttgaattaggctggaattgggtatgcgaggaagataacttatgaagatattacacttattaaagtaa |
106 |
Q |
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| T |
38090652 |
taattataaattatattgctcttttgttgttgattgaattaggctggaactgggtatgcgaggaagataacatatgaagatattacacttattaaagtaa |
38090751 |
T |
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| Q |
107 |
ataaccctataattattgatcaacactacgacgctttagaaagtgtaagcgatagtgtccgtaaaggagtgaaagtgagtgatgttacttttcgtggctt |
206 |
Q |
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| T |
38090752 |
ataaccctataattattgatcaacactacgacgctttagaaagtgtaagcgatagtgtccgtaaaggagtgaaagtgagtgatgttacttttcgtggctt |
38090851 |
T |
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| Q |
207 |
tcggggaaccgcaaatgagaa |
227 |
Q |
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| T |
38090852 |
tcggggaactgcaaatgagaa |
38090872 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 32730830 - 32730920
Alignment:
| Q |
57 |
tgggtatgcgaggaagataacttatgaagatattacacttattaaagtaaataaccctataattattgatcaacactacgacgctttagaa |
147 |
Q |
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| T |
32730830 |
tgggtatgctagaaagataacatatgaagatattattgtttttaaagtggagaatcctgtgattattgatcaacagtacgacgctttagaa |
32730920 |
T |
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