View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14638_low_4 (Length: 522)
Name: NF14638_low_4
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 17 - 505
Target Start/End: Complemental strand, 15867100 - 15866612
Alignment:
| Q |
17 |
cagaccctgatcaaattaaggaagtctttaacaagatcgaagacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtatagtaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15867100 |
cagaccctgatcaaattaaggaagtctttaacaagatcgaggacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtataataca |
15867001 |
T |
|
| Q |
117 |
ttatgagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaataattcttgcaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15867000 |
ttatgagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaataattcttgcaa |
15866901 |
T |
|
| Q |
217 |
tttggtaaattaaatttctaatttttattcttataatatgatttatttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatgata |
316 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
15866900 |
ttttgcaaattaaatttctaatttttattcttataatatgatttacttcaaactatagggtatgctacctgcattttcttacagttgcaatgaaatgatt |
15866801 |
T |
|
| Q |
317 |
agcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctttccttcagaattttacctgtgatgtaatttctcggacagcat |
416 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15866800 |
agtaaatggaaggaactattgtcatcagatggaacatgtgaggttgatgtttggcctttccttcagaattttacctgtgatgtaatttctcggacggcat |
15866701 |
T |
|
| Q |
417 |
ttggaagcagctacgcagaaggagaaaaactatttcaacttctaaagaagcagggatttcttttgacgatagggcgacaaacgaacaat |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
15866700 |
ttggaagcagctacgcagaaggagaaaaactatttcaacttctaaagaagcagggatttcttttgatgacagggcgacaaacgaacaat |
15866612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 15 - 505
Target Start/End: Complemental strand, 15860716 - 15860225
Alignment:
| Q |
15 |
cacagaccctgatcaaattaaggaagtctttaacaagatcgaagacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtatagta |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| | ||| |||||||||||||||||||| |||||||||| || |
|
|
| T |
15860716 |
cacagaccctgatcaaattaaggatgtctttaacaagattgatgacttccccaaaccaaaactaagatccatcgccaagtatttgaacgttggtatacta |
15860617 |
T |
|
| Q |
115 |
cattatgagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaat-aattcttg |
213 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15860616 |
gatcatgagggtaagaaatgggctaaacataggaagatcgccaatccagcattccacctagaaaaattgaaagtaaggttattgctttaattaattcttg |
15860517 |
T |
|
| Q |
214 |
caatttggtaaattaaatttctaatttttattcttataatatgatttatttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatg |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15860516 |
caattttgtaaattaaatttctaatttttattcttataatatgatttacttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatg |
15860417 |
T |
|
| Q |
314 |
ataagcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctttccttcagaattttacctgtgatgtaatttctcggacag |
413 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15860416 |
ataagcaaatggaagggattattgtcatcagatggaacatgtgagattgatgtttggccttcccttcagaattttacctgtgatgtaatttctcggacag |
15860317 |
T |
|
| Q |
414 |
catttggaagcagctacgcagaaggagaaaaactatttcaacttctaaagaagcagggatttcttttgacgatagggcgacaaacgaacaat |
505 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||| |
|
|
| T |
15860316 |
catttggaagcagctacgcagaaggaacaaaactatttcaacttctaaagaagcagggatttcttttgatgacagggcgacacacgaacaat |
15860225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 15 - 503
Target Start/End: Complemental strand, 15853354 - 15852866
Alignment:
| Q |
15 |
cacagaccctgatcaaattaaggaagtctttaacaagatcgaagacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtatagta |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| || ||||||||||||| || |||| | |||| ||| ||||||||| |||||||||||| |
|
|
| T |
15853354 |
cacagaccctgatcaaattaaggatgtctttaacaagactgaggacttccccaaacaaaagttaagacccattgccttgtatttgagtgttggtatagta |
15853255 |
T |
|
| Q |
115 |
cattatgagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaataattcttgc |
214 |
Q |
| |
|
|| |||||||| |||||||||||| |||| | ||||| | ||||||||||||||| ||||||||||||||||||||||||| ||| ||||| || | |
|
|
| T |
15853254 |
caccatgagggtgagaaatgggctacacatcgaaagatagtcaatccggcattccatatagaaaaattgaaagtaaggttattacttagctaattatttc |
15853155 |
T |
|
| Q |
215 |
aatttggtaaattaaatttctaatttttattcttataatatgatttatttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatga |
314 |
Q |
| |
|
||||| | ||||| ||||||||| |||| ||||||| |||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15853154 |
aattttgcaaattgaatttctaacttttcttcttattatatgatttacttcatactatagggtatgctgcctgcattttctcacagttgcaatgaaatga |
15853055 |
T |
|
| Q |
315 |
taagcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctttccttcagaattttacctgtgatgtaatttctcggacagc |
414 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
15853054 |
taagcaaatggaatggtttattgtcatcagatggaacatgtgagattgatgtttggcctttccttcagaatttgacgtgtgatgtaatttctcggacagc |
15852955 |
T |
|
| Q |
415 |
atttggaagcagctacgcagaaggagaaaaactatttcaacttctaaagaagcagggatttcttttgacgatagggcgacaaacgaaca |
503 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||| || || | ||||||||||| |
|
|
| T |
15852954 |
atttggaagcagctacgcagaaggaacaaaactatttcaacttttgaagaagcagggagttcttttgatgaaagaactacaaacgaaca |
15852866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 482
Target Start/End: Complemental strand, 15846526 - 15846059
Alignment:
| Q |
15 |
cacagaccctgatcaaattaaggaagtctttaacaagatcgaagacttccccaaaccaatattaaaatccatcgccaagtatttgagcgttggtatagta |
114 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||| || |||||||||||| ||| || | ||||| |||||||||| | |||||||||| | |
|
|
| T |
15846526 |
cacagaccctgatcaaattaaggaaatctttaacaggatggaggacttccccaaatcaaagttcatctccatttccaagtatttcggtgttggtatagca |
15846427 |
T |
|
| Q |
115 |
cattatgagggtaagaaatgggctaaacataggaagatcgccaatccggcattccacctagaaaaattgaaagtaaggttattgctttaa-taattcttg |
213 |
Q |
| |
|
|| | |||||| ||||||||||||||||| | ||||| | |||||||||||||||| |||||||||||||||||||||||||||| || ||||| || |
|
|
| T |
15846426 |
caccaagagggtgagaaatgggctaaacatcgaaagatagtcaatccggcattccacatagaaaaattgaaagtaaggttattgctctagctaattattt |
15846327 |
T |
|
| Q |
214 |
caatttggtaaattaaatttctaatttttattcttataatatgatttatttcaaactataggttatgctgcctgcattttctcacagttgcaatgaaatg |
313 |
Q |
| |
|
|||||| |||| || ||||||||| |||| |||||||||||||||||| || | ||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15846326 |
caattttgtaa-ttgaatttctaaattttcttcttataatatgatttactttatactgtagggtatgctgcctgcattttctcacagttgcaatgaaatg |
15846228 |
T |
|
| Q |
314 |
ataagcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctttccttcagaattttacctgtgatgtaatttctcggacag |
413 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| |
|
|
| T |
15846227 |
ataagcaaatggaagggattattgtcatcagatggaacatgtgagcttgatgtttggcctttccttcagaatttgacctgtgatgtaatttctagaacag |
15846128 |
T |
|
| Q |
414 |
catttggaagcagctacgcagaaggagaaaaactatttcaacttctaaagaagcagggatttcttttga |
482 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15846127 |
catttggaagcagctatgcagaaggagcaaaaatatttcaacttctaaagaagcagggatttattttga |
15846059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 299 - 468
Target Start/End: Original strand, 30482838 - 30483007
Alignment:
| Q |
299 |
agttgcaatgaaatgataagcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctttccttcagaattttacctgtgatg |
398 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||| | | || |||| ||||||| ||||||| ||||||| ||||||| | |||| ||||| | |||||| |
|
|
| T |
30482838 |
agttgcaatgatatgattagcaaatgggagggaatgttatcattagatggatcatgtgaaattgatgtatggccttccattcaaaatttggctagtgatg |
30482937 |
T |
|
| Q |
399 |
taatttctcggacagcatttggaagcagctacgcagaaggagaaaaactatttcaacttctaaagaagca |
468 |
Q |
| |
|
| ||| |||| |||||||||||||| || || | ||||||| |||| |||||||||||| |||| |||| |
|
|
| T |
30482938 |
ttattgctcgaacagcatttggaagtagttatgaagaaggaataaaaatatttcaacttcaaaaggagca |
30483007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 335 - 458
Target Start/End: Original strand, 30475271 - 30475394
Alignment:
| Q |
335 |
ttgtcatcagatggaacatgtgagcttgatgtttggcctttccttcagaattttacctgtgatgtaatttctcggacagcatttggaagcagctacgcag |
434 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||||||||||||| ||||| | ||||||| |||||| | |||||||||||||| || || | || |
|
|
| T |
30475271 |
ttgtcatcagatggatcatgtgaattggatgtttggcctttccttcaaaatttggcgagtgatgttatttctagaacagcatttggaagtagttatgaag |
30475370 |
T |
|
| Q |
435 |
aaggagaaaaactatttcaacttc |
458 |
Q |
| |
|
| ||| ||| | |||||||||||| |
|
|
| T |
30475371 |
agggaaaaagaatatttcaacttc |
30475394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 458
Target Start/End: Original strand, 30394070 - 30394229
Alignment:
| Q |
299 |
agttgcaatgaaatgataagcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctttccttcagaattttacctgtgatg |
398 |
Q |
| |
|
||||||||||| ||||| ||||||||| ||||| | ||||| ||||||||| ||||||| | || || ||||||| ||| |||||||| | |||||| |
|
|
| T |
30394070 |
agttgcaatgatatgattagcaaatgggaggaaatgttgtcttcagatggatcatgtgaaatagacgtatggccttccctgcagaatttggcaagtgatg |
30394169 |
T |
|
| Q |
399 |
taatttctcggacagcatttggaagcagctacgcagaaggagaaaaactatttcaacttc |
458 |
Q |
| |
|
|||||||| || || |||||||| || || | ||||||| ||| | |||||||||||| |
|
|
| T |
30394170 |
ctatttctcgaactgcgtttggaagtagttatgaagaaggaaaaagaatatttcaacttc |
30394229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 458
Target Start/End: Original strand, 30468106 - 30468265
Alignment:
| Q |
299 |
agttgcaatgaaatgataagcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctttccttcagaattttacctgtgatg |
398 |
Q |
| |
|
|||||| |||| |||| ||||||||| || || | ||||| ||||||||| ||||||| | || || |||||||||||||| |||||| || |||||| |
|
|
| T |
30468106 |
agttgcgatgatctgattagcaaatgggagaaaatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaattttgccagtgatg |
30468205 |
T |
|
| Q |
399 |
taatttctcggacagcatttggaagcagctacgcagaaggagaaaaactatttcaacttc |
458 |
Q |
| |
|
| |||||||| |||| |||||||| || || | ||| ||| ||| | |||||||||||| |
|
|
| T |
30468206 |
ttatttctcgagcagcgtttggaagtagttatgaagagggaaaaagaatatttcaacttc |
30468265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 458
Target Start/End: Original strand, 30383941 - 30384100
Alignment:
| Q |
299 |
agttgcaatgaaatgataagcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctttccttcagaattttacctgtgatg |
398 |
Q |
| |
|
||||||||||| |||| | ||||||| || || | ||||| ||||||||| ||||||| | ||| | ||||||| ||| || ||||| | |||||| |
|
|
| T |
30383941 |
agttgcaatgatttgattaacaaatgggagaaaatgttgtcttcagatggatcatgtgaaatagatatatggccttccctgcaaaatttggcaagtgatg |
30384040 |
T |
|
| Q |
399 |
taatttctcggacagcatttggaagcagctacgcagaaggagaaaaactatttcaacttc |
458 |
Q |
| |
|
|||||||| || ||||||||||| ||||| | ||||||| ||| | |||||||||||| |
|
|
| T |
30384041 |
ctatttctcgaaccgcatttggaagtagctatgaagaaggaaaaagaatatttcaacttc |
30384100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 458
Target Start/End: Original strand, 30436364 - 30436523
Alignment:
| Q |
299 |
agttgcaatgaaatgataagcaaatggaaggaattattgtcatcagatggaacatgtgagcttgatgtttggcctttccttcagaattttacctgtgatg |
398 |
Q |
| |
|
|||||| |||| |||| ||||||||| || || | ||||| ||||||||| ||||||| | || || |||||||||||||| ||||| || ||||| |
|
|
| T |
30436364 |
agttgcgatgatttgattagcaaatgggagaaaatgttgtcgtcagatggatcatgtgaaatggacgtatggcctttccttcaaaatttggccagtgatc |
30436463 |
T |
|
| Q |
399 |
taatttctcggacagcatttggaagcagctacgcagaaggagaaaaactatttcaacttc |
458 |
Q |
| |
|
| |||||||| |||| |||||||| || || | ||| ||| ||| | |||||||||||| |
|
|
| T |
30436464 |
ttatttctcgagcagcgtttggaagtagttatgaagagggaaaaagaatatttcaacttc |
30436523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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