View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14638_low_5 (Length: 501)
Name: NF14638_low_5
Description: NF14638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14638_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 17 - 488
Target Start/End: Complemental strand, 53524117 - 53523646
Alignment:
| Q |
17 |
gaaggtggtgagactgtatttcctaatgctaagcccaactttaattctgtatccaaatatcatcctggaaagggtctagtagtgaaaccgaaaatgggcg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
53524117 |
gaaggtggtgagactgtatttcctaatgctaagcccaactttaattctgtatccaaatatcatcctggaaagggtttagtagtgaaaccgaaaatgggcg |
53524018 |
T |
|
| Q |
117 |
atgctctgctgttttggagcgttaagccagatggctcactagatacagctagcttacatggttagaaactcttacaatcctctctcgtaaaatatttata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53524017 |
atgctctgctgttttggagcgttaagccagatggctcactagatacagctagcttacatggttagaaactcttacaatcctctctcgtaaaatatttata |
53523918 |
T |
|
| Q |
217 |
aatagagtatagaacttatgttgaaaatatcatagccatgtgattcaaacttatattacattctactttagaaattagaagctatgaatgatgaagttaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53523917 |
aatagagtatagaacttatgttgaaaatatcatagccatgtgattcaaacttatattacattctactttagaaattagaagctatgaatgatgaagttaa |
53523818 |
T |
|
| Q |
317 |
ttaatttatctttgctttcaggtggtagcccagtaattagaggaagtaaatgggcttcaaataagttgctgcatcttacggagttcaaagtttaaaggat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53523817 |
ttaatttatctttgctttcaggtggtagcccagtaattagaggaagtaaatgggcttcaaataagttgctgcatcttacggagttcaaagtttaaaggat |
53523718 |
T |
|
| Q |
417 |
gaggcaattgttctcctcaaataggggtccgaattttacttgcgatttatcaaatattaagtgaagtttgtg |
488 |
Q |
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| T |
53523717 |
gaggcaattgttctcctcaaataggggtccgaattttacttgcgatttatcaaatattaagtgaagtttgtg |
53523646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 248 - 409
Target Start/End: Complemental strand, 53509693 - 53509532
Alignment:
| Q |
248 |
atagccatgtgattcaaacttatattacattctactttagaaattagaagctatgaatgatgaagttaattaatttatctttgctttcaggtggtagccc |
347 |
Q |
| |
|
||||||||||||||||||| |||||||||||| || || |||||| |||| ||||||||||||||||| ||||||| |||||||||||||| ||||| || |
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| T |
53509693 |
atagccatgtgattcaaacctatattacattccacattggaaatttgaagatatgaatgatgaagttatttaatttttctttgctttcaggcggtagtcc |
53509594 |
T |
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| Q |
348 |
agtaattagaggaagtaaatgggcttcaaataagttgctgcatcttacggagttcaaagttt |
409 |
Q |
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| T |
53509593 |
ggtaattagaggaaataaatgggcttcaactaagtggctgcatcttacggagttcaaagttt |
53509532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 218 - 393
Target Start/End: Complemental strand, 53513256 - 53513081
Alignment:
| Q |
218 |
atagagtatagaacttatgttgaaaatatcatagccatgtgattcaaacttatattacattctactttagaaattagaagctatgaatgatgaagttaat |
317 |
Q |
| |
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|||||||||| | |||||| |||||| | ||||||||||||||||||||||||||||||| || || |||||| ||||||||||||||||||||| | |
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| T |
53513256 |
atagagtatatactttatgtagaaaatcttatagccatgtgattcaaacttatattacatttcacattggaaatttcaagctatgaatgatgaagttatt |
53513157 |
T |
|
| Q |
318 |
taatttatctttgctttcaggtggtagcccagtaattagaggaagtaaatgggcttcaaataagttgctgcatctt |
393 |
Q |
| |
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||||| ||||||||||||||| ||||| |||||||||||||||| |||||||||||||| ||||| |||||||||| |
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| T |
53513156 |
taattaatctttgctttcaggcggtagtccagtaattagaggaaataaatgggcttcaactaagtggctgcatctt |
53513081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 53510208 - 53510045
Alignment:
| Q |
17 |
gaaggtggtgagactgtatttcctaatgctaagcccaactttaattctgtatccaaatatcatcctggaaagggtctagtagtgaaaccgaaaatgggcg |
116 |
Q |
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||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| ||| |||||||||| ||||||||| |||||||| | |
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| T |
53510208 |
gaaggtggtgagactgtatttcctaatgctaagcctaacataaattctgtatccaaatatc---ctgaaaagggtctatcagtgaaaccaaaaatgggtg |
53510112 |
T |
|
| Q |
117 |
atgctctgctgttttggagcgttaagccagatggctcactagatacagctagcttacatggttagaa |
183 |
Q |
| |
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|||||||||||||| ||||| | |||||||||||| |||| ||||| |||| ||||| |||||||| |
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| T |
53510111 |
atgctctgctgtttcggagcatgaagccagatggcacacttgatacttctagtttacacggttagaa |
53510045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 53513817 - 53513653
Alignment:
| Q |
17 |
gaaggtggtgagactgtatttcctaatgctaagcccaactttaattctgtatccaaatatcatcctggaaagggtctagtagtgaaaccgaaaatgggcg |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| | ||||| | |||||| ||||||||| |||||||||| |
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| T |
53513817 |
gaaggtggtgagactgtatttcctgatgctcagcccaactttacttctgtatccaaatgtt---ctggagatggtctatcagtgaaaccaaaaatgggcg |
53513721 |
T |
|
| Q |
117 |
atgctctgctgttttggagcgttaagccagatggctcactagatacagctagcttacatggttagaaa |
184 |
Q |
| |
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| |||||||||||||||||| | |||||||||||| |||||||||| |||| ||||| ||||||||| |
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| T |
53513720 |
acgctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaa |
53513653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 287 - 411
Target Start/End: Complemental strand, 53547359 - 53547235
Alignment:
| Q |
287 |
gaaattagaagctatgaatgatgaagttaattaatttatctttgctttcaggtggtagcccagtaattagaggaagtaaatgggcttcaaataagttgct |
386 |
Q |
| |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| |||| |||||| ||||| ||||||| |||||| |||| | | |
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| T |
53547359 |
gaaattaaaagctatgattgatgaagttaattaatttatctttgctttcaggcggttgccccgtaattgtaggaaataaatggtcttcaacaaagtggat |
53547260 |
T |
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| Q |
387 |
gcatcttacggagttcaaagtttaa |
411 |
Q |
| |
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||||||| ||||| |||||||||| |
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| T |
53547259 |
gcatcttgaggagtacaaagtttaa |
53547235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 53547664 - 53547567
Alignment:
| Q |
84 |
gaaagggtctagtagtgaaaccgaaaatgggcgatgctctgctgttttggagcgttaagccagatggctcactagatacagctagcttacatggttag |
181 |
Q |
| |
|
||||||||||| | ||||||| |||||||| ||||||||||||||||||||| | | |||||||| | |||||||| || | || ||||| |||||| |
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| T |
53547664 |
gaaagggtctatcactgaaaccaaaaatgggtgatgctctgctgttttggagcatgaggccagatgccacactagatgcatccagtttacacggttag |
53547567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 210 - 409
Target Start/End: Original strand, 16609869 - 16610067
Alignment:
| Q |
210 |
atttataaatagagtatagaac-ttatgttgaaaatatcatagccatgtgattcaaacttatattacattctactttagaaattagaagctatgaatgat |
308 |
Q |
| |
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||||||||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| | |
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| T |
16609869 |
atttataaataaagtat-gaacgttatgttgaaaatattatagccatgtgattcaaacttatattacattccactttgaaaattagaagctgtgaatgtt |
16609967 |
T |
|
| Q |
309 |
gaagttaattaatttatctttgctttcaggtggtagcccagtaattagaggaagtaaatgggcttcaaataagttgctgcatcttacggagttcaaagtt |
408 |
Q |
| |
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||||||||||| ||| ||||||||||||| ||||||| |||||||| | ||| |||||||||||||| ||||||||||||||||| ||| ||||||||| |
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| T |
16609968 |
aaagttaattaactta-ctttgctttcaggcggtagcctagtaattaaacgaaataaatgggcttcaactaagttgctgcatcttaaggaattcaaagtt |
16610066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 477
Target Start/End: Original strand, 16610102 - 16610169
Alignment:
| Q |
411 |
aaggatgaggcaattgttctcctc-aaataggggtccgaattttacttgcgatttatcaaatattaag |
477 |
Q |
| |
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|||||||||||||||||||||||| |||| |||||| ||||||||| | |||||| |||||||||| |
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| T |
16610102 |
aaggatgaggcaattgttctcctcaaaattggggtcaaaattttactaacaatttataaaatattaag |
16610169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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