View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14639_high_1 (Length: 740)
Name: NF14639_high_1
Description: NF14639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14639_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 125 - 722
Target Start/End: Original strand, 39955162 - 39955748
Alignment:
| Q |
125 |
tataccatttgtgatgaagtaatgatgttgatggaagagagagaaagttttagagaagagaataggactcagaagaatgatctgaagctgaaagacaaag |
224 |
Q |
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| T |
39955162 |
tataccatttgtgatgaagtaatgatgttgatggaagagagagaaagttttagagaagagaataggactcagaagaatgatctgaagctgaaagacaaag |
39955261 |
T |
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| Q |
225 |
agaaaatagaggtaataagacagctgagttcaacaatagatatgctgaagcaggaaaatgtaagaatgagaagcttcatagctaaggaatctgccaagaa |
324 |
Q |
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| T |
39955262 |
agaaaatagaggtaataagacagctgagttcaacaatagatatgctgaagcaggaaaatgtaaaaatgagaagcttcatagctaaggaatctgccaagaa |
39955361 |
T |
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| Q |
325 |
atggaagaccccatttgagttcaacaaacttattgagacattctcagggaaattgcttaaggggattccaaggaataagcctagtattgtagctctctag |
424 |
Q |
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| T |
39955362 |
atggaagaccccatttgagttcaacaaacttattgaaacattctcagggaaattgcttaaggggattccaaggaataagcctagtattgtagctctctag |
39955461 |
T |
|
| Q |
425 |
atatggtttaattagtttaaaatactatatagttctctaaacaatattataaagatgatatatacatatgtaatatgttagtgccttatgatagtagcct |
524 |
Q |
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| T |
39955462 |
atatggttcaattagtttaaaatactatatagttctctaaacaatattataaagatgatatatacatatgtaatatgttagtgccttatgatagtagcct |
39955561 |
T |
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| Q |
525 |
agaaatcaataaaatatgttctgtcttccaatcctagtgtactttattacagaactaattaatattcttaacaatattccaaatgttacaattttattta |
624 |
Q |
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| T |
39955562 |
agaaatcaataaaatatgt------ttccaatcctagtgtactttattacagaactaattaatattcttaacaatattccaaatgttacaattttattta |
39955655 |
T |
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| Q |
625 |
attgtctaatactgtattcaacccaacgtgcccatctctccttttcatgcctaaaaagtttaatttcccctatatcttaatgtgaagtgcacaacaag |
722 |
Q |
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| T |
39955656 |
tttatttatt--tgtctaatacc---tgtattcatctctccttttcatgcctcaaaagtttaatttcccctatatcttaatgtgaagtgcacaacaag |
39955748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 39955049 - 39955101
Alignment:
| Q |
12 |
gagatgaactgaagcagaaagataccatttgcaatgaagtaatgaagttgagg |
64 |
Q |
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| T |
39955049 |
gagatgaactgaagcagaaagataccatttgcaatgaagtaatgaagttgagg |
39955101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 39954712 - 39954750
Alignment:
| Q |
26 |
cagaaagataccatttgcaatgaagtaatgaagttgagg |
64 |
Q |
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| T |
39954712 |
cagaaagataccatttgtaatgacgtaatgaagttgagg |
39954750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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