View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14639_high_12 (Length: 241)
Name: NF14639_high_12
Description: NF14639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14639_high_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 241
Target Start/End: Complemental strand, 42702971 - 42702739
Alignment:
| Q |
7 |
gaaagtatagcacaactgtgaaatgcaactctcctcttattctcagaaaaagataatgatatgaaaatttaacattactcataaagaaaaatgctattgc |
106 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42702971 |
gaaagtatagcacaactg--aaatgcaactctcctcttattctcagaaaaagataatgatatgaaaatttaacattactcataaagaaaaatgctattgc |
42702874 |
T |
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| Q |
107 |
tagctacattttccacagaaactttttgaaacacagaaaatggaacagaacaagaacaaggacatgttctgcttcattcccactcaaacttggatttgct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42702873 |
tagctacattttccacagaaactttttgaaacacagaaaatggaacagaacaagaacaaggacatgttctgcttcattcccactcaaacttggatttgct |
42702774 |
T |
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| Q |
207 |
gcagttaacaatccacagtcagcacgttggtgact |
241 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
42702773 |
gcagttaacaatccacagtcagcacgttggtgact |
42702739 |
T |
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