View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14639_high_5 (Length: 412)
Name: NF14639_high_5
Description: NF14639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14639_high_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 6 - 412
Target Start/End: Complemental strand, 44349729 - 44349331
Alignment:
| Q |
6 |
agcatgtgccaaatatgctgtgtatggtgtagattatgaaggacatggacaatctgaaggtgttcgttgttacattaagaagttcaataacattgttaat |
105 |
Q |
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| T |
44349729 |
agcatgtgccaaatatgctgtgtatggtgtagattatgaaggacatggacaatctgaaggtgttcgttgttacattaagaagttcaataacattgttaat |
44349630 |
T |
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| Q |
106 |
gactgttatgactttttcaagtcagttagtggtatggattcaaagcctttgtctaatcctttgagtgtatacatttttaatcaattctattattttcatc |
205 |
Q |
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| T |
44349629 |
gactgttatgactttttcaagtcagttagtggtatggattcaaagcctttgtctaatcttttgagtgtatacatttt-aatcaattctatt---ttcatc |
44349534 |
T |
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| Q |
206 |
attcattttcatgttaattaattccagtgcttcaagagtacaagggaaaagctaggttcttgtatggagagtccatgggtggagcagttagtctactttt |
305 |
Q |
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||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44349533 |
attcattttcatgttaatt----ccagtgcttcaagagtacatgggaaaagctaggttcttgtatggagagtccatgggtggagcagttagtctactttt |
44349438 |
T |
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| Q |
306 |
gcatcaaaaggacccttctttttgggatggtgccgttcttgtcgcacccatgtgtaaggtacacattgtaaataagtatttacactaacaatgtatatga |
405 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44349437 |
gcatcaaaaggatccttctttttgggatggtgccgttcttgtcgcacccatgtgtaaggtacacattgtaaaaaagtatttacactaacaatgtatatga |
44349338 |
T |
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