View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14639_high_7 (Length: 390)
Name: NF14639_high_7
Description: NF14639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14639_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 375
Target Start/End: Complemental strand, 2800638 - 2800274
Alignment:
| Q |
11 |
aagtatgtaagatttctttccagcatcagcaggtgcagcaaactgcagtttggcttttaatttccgctgcaaggaaacccgcttaattgcaagtaacgag |
110 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2800638 |
aagtatgtaagatttctttccagcatcaacaggtgcagcaaactgcagtttggcttttaatttccgctgcaaggaaacccgcttaattgcaagtaacgag |
2800539 |
T |
|
| Q |
111 |
ttggttttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttctatcttaccgtcgatat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
2800538 |
ttggttttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttatgtcttaccgtcgatat |
2800439 |
T |
|
| Q |
211 |
ccctctccagagtgacacatattgttataccctcaccagtccggacactgtcattttgcaggacttcatacgacaaatcaacattaggaaagcgattaca |
310 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2800438 |
ccctctccagagtgacacatattgttataacctcaccagtccggacactgtcattttgcaggacttcatacaacaaatcaacattaggaaagcgattaca |
2800339 |
T |
|
| Q |
311 |
aaagcgagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgccttgcaacatctt |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2800338 |
aaagcgagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgcctcgcaacatctt |
2800274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 375
Target Start/End: Original strand, 1680090 - 1680454
Alignment:
| Q |
11 |
aagtatgtaagatttctttccagcatcagcaggtgcagcaaactgcagtttggcttttaatttccgctgcaaggaaacccgcttaattgcaagtaacgag |
110 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1680090 |
aagtatgtaagatttctttccagcatcatcaggtgcagcaaactgcagtttggcttttaatttccgctgcaaggaaacccgcttaattgcaagtaacgag |
1680189 |
T |
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| Q |
111 |
ttggttttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttctatcttaccgtcgatat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
1680190 |
ttggttttggtatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttttgtcttaccgtcgatat |
1680289 |
T |
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| Q |
211 |
ccctctccagagtgacacatattgttataccctcaccagtccggacactgtcattttgcaggacttcatacgacaaatcaacattaggaaagcgattaca |
310 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1680290 |
ccctctccagagtgacacttattgttatatcctcaccagtccggacactgtcattttgcaggacttcatactacaaatcaacattaggaaagcgattaca |
1680389 |
T |
|
| Q |
311 |
aaagcgagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgccttgcaacatctt |
375 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1680390 |
aaagcgagcaatgtcaaataagtatgaatttggcatgtttaacaattcacgcctcgcaacatctt |
1680454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 21 - 226
Target Start/End: Complemental strand, 29269804 - 29269599
Alignment:
| Q |
21 |
gatttctttccagcatcagcaggtgcagcaaactgcagtttggcttttaatttccgctgcaaggaaacccgcttaattgcaagtaacgagttggttttgg |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||| || |||| ||||||||||| | | ||||||||||| |
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| T |
29269804 |
gatttctttccagcatcagcaggtgcagcaaactccagtttggctttcaacttccgctgcagcgacacccttttaattgcaagcagcatgttggttttgg |
29269705 |
T |
|
| Q |
121 |
tatcaccaacaacaagccaccatccttcctccttggcttttggatacctaggagcatcaacaggtcctatttctatcttaccgtcgatatccctctccag |
220 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||| | ||||| || | ||||| ||| || |
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| T |
29269704 |
tatcaccaacaacaagccaccacccttcttccttggctttcggatacctaggagcatcaacaggtcctacttctgttttaccttcaagatcccgctcaag |
29269605 |
T |
|
| Q |
221 |
agtgac |
226 |
Q |
| |
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|||||| |
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|
| T |
29269604 |
agtgac |
29269599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 40469833 - 40469795
Alignment:
| Q |
337 |
aatttggcatgtttaacaattcacgccttgcaacatctt |
375 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||| |
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| T |
40469833 |
aatttggcatgtttaacaattcacgcctcgcaacatctt |
40469795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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