View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14639_low_10 (Length: 294)
Name: NF14639_low_10
Description: NF14639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14639_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 3 - 276
Target Start/End: Complemental strand, 3305017 - 3304744
Alignment:
| Q |
3 |
gtgataagaaagctagataccaaagttacacagataagatcaaaagcaacatcaaggaacaaaagtgtatcagtatcttatagattccatctttgtcact |
102 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3305017 |
gtgaaaagaaagctagataccaaagttacacagataagatcaaaagcaacatcaaggaacaaaagtgtatcagtatcttatagattccatctttgtcact |
3304918 |
T |
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| Q |
103 |
gaataattttgtaactcagtaaaagattaggactttcattcaagcgtagatgctacgtcgagatacttgtaatcaaacacttcaaatattctcagagctt |
202 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3304917 |
gaataattttgtaactcggtaaaagattaggactttcattcaagcgtagatgctacgtcgagatacttgtaatcaaacacttcaaatattctcagagctt |
3304818 |
T |
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| Q |
203 |
tcgcgggatgatttgtatatccggtatgcggctatgcacattgtgaaattacctataacagttagtgccgcttg |
276 |
Q |
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| T |
3304817 |
tcgcgggatgatttgtatatccggtatgcggctaggcacattgtgaaattacctataacagttagtgccgcttg |
3304744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 62 - 276
Target Start/End: Complemental strand, 3293290 - 3293074
Alignment:
| Q |
62 |
caaaagtgtatcagtatcttatagattccatctttgtcact--gaataattttgtaactcagtaaaagattaggactttcattcaagcgtagatgctacg |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| | |||| |||||| ||||||||||||| ||||| |||||| ||||||| |
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| T |
3293290 |
caaaagtgtatcagtatcttatagattccatctttgtcacttagaataatatggtaaatcagtagaagattaggacttccattcgagcgtaaatgctact |
3293191 |
T |
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| Q |
160 |
tcgagatacttgtaatcaaacacttcaaatattctcagagctttcgcgggatgatttgtatatccggtatgcggctatgcacattgtgaaattacctata |
259 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
3293190 |
tcgagatacttgtaatcaaacacttcaaatgttctcagagctttcgcgggatgatttgtatatccggtatgcagctatacacattgtgaaattacctata |
3293091 |
T |
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| Q |
260 |
acagttagtgccgcttg |
276 |
Q |
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||||||||||||||||| |
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| T |
3293090 |
acagttagtgccgcttg |
3293074 |
T |
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