View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14639_low_13 (Length: 240)

Name: NF14639_low_13
Description: NF14639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14639_low_13
NF14639_low_13
[»] chr3 (5 HSPs)
chr3 (20-240)||(51346070-51346289)
chr3 (135-239)||(13758192-13758296)
chr3 (138-240)||(34291988-34292090)
chr3 (171-240)||(14760251-14760320)
chr3 (138-240)||(16237851-16237953)
[»] chr7 (8 HSPs)
chr7 (18-240)||(41216050-41216271)
chr7 (137-240)||(42017821-42017924)
chr7 (143-236)||(16560130-16560223)
chr7 (143-236)||(16605439-16605532)
chr7 (20-72)||(14315237-14315289)
chr7 (157-206)||(12092744-12092793)
chr7 (163-240)||(26569741-26569818)
chr7 (156-240)||(34237188-34237272)
[»] chr4 (4 HSPs)
chr4 (18-240)||(16584447-16584675)
chr4 (18-220)||(25197591-25197795)
chr4 (135-236)||(2610617-2610719)
chr4 (203-239)||(297294-297330)
[»] chr1 (3 HSPs)
chr1 (20-240)||(33135952-33136173)
chr1 (138-240)||(38274051-38274153)
chr1 (178-206)||(5958329-5958357)
[»] scaffold0027 (1 HSPs)
scaffold0027 (143-240)||(45163-45260)
[»] chr5 (4 HSPs)
chr5 (137-240)||(11305855-11305958)
chr5 (20-218)||(28043046-28043244)
chr5 (136-240)||(32097761-32097864)
chr5 (138-240)||(14920744-14920844)
[»] chr2 (4 HSPs)
chr2 (137-240)||(20535302-20535405)
chr2 (135-230)||(21936569-21936663)
chr2 (166-240)||(32609950-32610023)
chr2 (19-82)||(20535077-20535140)
[»] chr8 (4 HSPs)
chr8 (29-240)||(458935-459151)
chr8 (19-107)||(16871410-16871498)
chr8 (167-240)||(447640-447713)
chr8 (167-240)||(16345663-16345736)
[»] scaffold0003 (2 HSPs)
scaffold0003 (154-240)||(291020-291106)
scaffold0003 (19-82)||(291179-291243)
[»] scaffold0078 (1 HSPs)
scaffold0078 (135-239)||(280-384)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 51346070 - 51346289
Alignment:
Q  20 taaaatgaaatatatcactcaattaaaaagttcttcctagtacaaggcgtatcaggaaaagaattagagtcataaatatatttacagaaagtgggaaaca 119  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| |||| ||| ||| |||||||||||||||||||||||    
T  51346070 taaaatgaaatacatcactcaatcaaaaagttcttcctaatacaaggcgtatcaggaaaagaactagaatcacaaacatatttacagaaagtgggaaaca 51346169  T
Q  120 aataaatagtgaatgaaaacagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagatta 219  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |||||||||||||||||| || |||||||||||||||    
T  51346170 aataaatagtgaatgaaaacagagaaagaaataacattagcatatgtccaacatagtgaatggattaagccaccatccatggta-ttgaaagagagatta 51346268  T
Q  220 ggaagtttcgccttcaaccac 240  Q
    |||||||||| ||||||||||    
T  51346269 ggaagtttcgtcttcaaccac 51346289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 13758192 - 13758296
Alignment:
Q  135 aaaacagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttc 234  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| | | ||||||| ||  ||||||||||||| |||||||||   | ||||||||||    
T  13758192 aaaacagagaaagaaaaagcattagctgatgcccaacatagtgaacggactaagccatcaaacatgatagttgaaggagagattaactattttcgccttc 13758291  T
Q  235 aacca 239  Q
    |||||    
T  13758292 aacca 13758296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 34292090 - 34291988
Alignment:
Q  138 acagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaac 237  Q
    ||||||||||||| ||||||| |  |||||||||||| |||| | | ||||||||||  |||| ||||||||||||||||| |||| |||||||||||||    
T  34292090 acagagaaagaaaaagcattaaccaatgcccaacatattgaacggactaagccaccaaacatggtagttgaaagagagatttggaattttcgccttcaac 34291991  T
Q  238 cac 240  Q
    |||    
T  34291990 cac 34291988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 14760251 - 14760320
Alignment:
Q  171 catagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaaccac 240  Q
    ||||||||| | | ||||||||||  | ||||||||||||||||||||||| | ||||||||||||||||    
T  14760251 catagtgaacggactaagccaccaagcgtgatagttgaaagagagattagggattttcgccttcaaccac 14760320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 16237953 - 16237851
Alignment:
Q  138 acagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaac 237  Q
    ||||||||||||| ||||||| |  ||||| |||||| |||| | | ||||||||||  |||  |||||||||||||||||   || ||||||||| |||    
T  16237953 acagagaaagaaaaagcattaaccaatgcctaacatattgaacggactaagccaccaaacatagtagttgaaagagagatttaaaattttcgccttaaac 16237854  T
Q  238 cac 240  Q
    |||    
T  16237853 cac 16237851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 41216050 - 41216271
Alignment:
Q  18 gctaaaatgaaatatatcactcaattaaaaagttcttcctagtacaaggcgtatcaggaaaagaattagagtcataaatatatttacagaaagtgggaaa 117  Q
    ||||||||||||||||| | | ||| |||||||||||||||| | |||||||| ||||| ||||| || ||||| ||| ||||||||  ||||  |||||    
T  41216050 gctaaaatgaaatatattagttaatcaaaaagttcttcctagcataaggcgtaccaggataagaactaaagtcacaaacatatttacgaaaag--ggaaa 41216147  T
Q  118 caaataaatagtgaatga-aaacagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagaga 216  Q
    |||||||| ||||| |   |||||||||||||||||| |||||| ||| |||||||||||||| | | |||||||||||||||| |||||||||||||||    
T  41216148 caaataaacagtgactctcaaacagagaaagaaatagtattagcatatccccaacatagtgaacggactaagccaccatccatggtagttgaaagagaga 41216247  T
Q  217 ttaggaagtttcgccttcaaccac 240  Q
    |||||||||||||| |||||||||    
T  41216248 ttaggaagtttcgcgttcaaccac 41216271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 42017924 - 42017821
Alignment:
Q  137 aacagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaa 236  Q
    ||||||||||||||||| |||||| |||||||||||||||||| | | ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42017924 aacagagaaagaaatagtattagcctatgcccaacatagtgaacggactaagccaccatccatgatagttgaaagagagcttaggaagtttcgccttcaa 42017825  T
Q  237 ccac 240  Q
    ||||    
T  42017824 ccac 42017821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 16560223 - 16560130
Alignment:
Q  143 gaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaa 236  Q
    |||||||| |||||||||  ||||||| ||| ||||| | ||||||||||||  ||||||||||||| ||||||||||  | ||||||||||||    
T  16560223 gaaagaaaaagcattagcagatgcccagcatggtgaacggattaagccaccaaacatgatagttgaaggagagattagttattttcgccttcaa 16560130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 16605439 - 16605532
Alignment:
Q  143 gaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaa 236  Q
    |||||||| |||||||||  ||||||| ||| ||||| | ||||||||||||  ||||||||||||| ||||||||||  | ||||||||||||    
T  16605439 gaaagaaaaagcattagcagatgcccagcatggtgaacggattaagccaccaaacatgatagttgaaggagagattagttattttcgccttcaa 16605532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 14315237 - 14315289
Alignment:
Q  20 taaaatgaaatatatcactcaattaaaaagttcttcctagtacaaggcgtatc 72  Q
    ||||||||||||||| ||||||| |||| |||||||||||  |||||||||||    
T  14315237 taaaatgaaatatattactcaatcaaaaggttcttcctagcgcaaggcgtatc 14315289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 12092793 - 12092744
Alignment:
Q  157 tagcttatgcccaacatagtgaatgaattaagccaccatccatgatagtt 206  Q
    ||||| |||||||||||||| |||| | |||||||| |||||||||||||    
T  12092793 tagctaatgcccaacatagtaaatggactaagccactatccatgatagtt 12092744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 26569818 - 26569741
Alignment:
Q  163 atgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaaccac 240  Q
    ||||||||||||||||| | |   ||||||||||||||||| ||||| |  |||  || |||||||||||||||||||    
T  26569818 atgcccaacatagtgaacggacatagccaccatccatgataattgaagggaagagaagcaagtttcgccttcaaccac 26569741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 34237272 - 34237188
Alignment:
Q  156 ttagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaaccac 240  Q
    ||||| |||||||||||| ||||| | | |||||||||| |||||||| ||||| |  | | || ||| ||||||||||||||||    
T  34237272 ttagcctatgcccaacatggtgaaaggactaagccaccaaccatgataattgaagggaataatatgaaatttcgccttcaaccac 34237188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 16584675 - 16584447
Alignment:
Q  18 gctaaaatgaaatatatcactcaattaaaaagttcttcctagtacaaggcgtatcaggaaaagaattagagtcataaatatatttacagaaagtgggaaa 117  Q
    ||||||||||||||||| ||| ||| |||||||||||||||| |||||| ||| ||||| ||||| ||  |||| ||| |||||||   |||  ||||||    
T  16584675 gctaaaatgaaatatattacttaatcaaaaagttcttcctagcacaaggtgtaccaggataagaactaaggtcacaaacatatttaacaaaaaagggaaa 16584576  T
Q  118 caaataaatagtgaatgaaaacagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccac-------catccatgatagttgaaa 210  Q
    |||||||| ||| ||  |||||||||||||||||| ||||||  |||| ||||||||||||| | | ||| ||||       |||| ||| |||||||||    
T  16584575 caaataaacagt-aaccaaaacagagaaagaaataacattagtctatgtccaacatagtgaacggactaatccaccatctatcatctatggtagttgaaa 16584477  T
Q  211 gagagattaggaagtttcgccttcaaccac 240  Q
    | |||||||||||||||| |||||||||||    
T  16584476 gtgagattaggaagtttcaccttcaaccac 16584447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 25197795 - 25197591
Alignment:
Q  18 gctaaaatgaaatatatcactcaattaaaaagttcttcctagtacaaggcgtatcaggaaaagaattagagtcataaatatatttacagaaagtgggaaa 117  Q
    ||||||||||||||||| || |||| |||| ||||||||||| |||||| ||| |||||||||||  | ||||| ||| |||| |||| | |  ||||||    
T  25197795 gctaaaatgaaatatattacccaatcaaaatgttcttcctagcacaaggtgtaccaggaaaagaacaaaagtcacaaacatatgtacaaagaaagggaaa 25197696  T
Q  118 caaataaatagtgaat-gaaaacagagaaagaaatagcattagcttatgccc-aacatagtgaatgaattaagccaccatccatgatagttgaaagagag 215  Q
    |    ||| ||  | |  |||||||||||||||||| |||||||  |||||| ||||||||||| | |  || | |||| ||||| ||||||||||||||    
T  25197695 cggtaaaacagaaactaaaaaacagagaaagaaataacattagccgatgcccaaacatagtgaacggaccaaacaaccaaccatggtagttgaaagagag 25197596  T
Q  216 attag 220  Q
    |||||    
T  25197595 attag 25197591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 2610617 - 2610719
Alignment:
Q  135 aaaacagagaaagaaatag-cattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgcctt 233  Q
    |||||||||||||||| |  |||||||  ||| |||||||  |||| | | ||||||||||  |||| ||||||||||||||||| |||| |||||||||    
T  2610617 aaaacagagaaagaaaaaaacattagccaatggccaacatgttgaacggactaagccaccaagcatggtagttgaaagagagatttggaattttcgcctt 2610716  T
Q  234 caa 236  Q
    |||    
T  2610717 caa 2610719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 297330 - 297294
Alignment:
Q  203 agttgaaagagagattaggaagtttcgccttcaacca 239  Q
    ||||||||||||||||||||| |||||||||||||||    
T  297330 agttgaaagagagattaggaactttcgccttcaacca 297294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 33135952 - 33136173
Alignment:
Q  20 taaaatgaaatatatcactcaattaaaaagttcttcctagtacaaggcgtatcaggaaaagaattagagtcataaatatatttacaga-aagtgggaaac 118  Q
    ||||||||||||||| ||||||| | ||||||| |||||| |||||| ||| |||||||||||  ||||||| ||| ||||||||||| ||   ||||||    
T  33135952 taaaatgaaatatattactcaatcataaagttcctcctagcacaaggtgtaccaggaaaagaacaagagtcacaaacatatttacagagaaaatggaaac 33136051  T
Q  119 a-aataaatagtgaatgaaaacagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagat 217  Q
    | |||| | |  | |  |||||||| |||||| |||||||||| ||||||||||||||| |  | |||||||||||| ||||| ||||||| |  ||| |    
T  33136052 acaatacagaaagtaa-aaaacagataaagaagtagcattagcctatgcccaacatagtcaccggattaagccaccaaccatggtagttgacaacgaggt 33136150  T
Q  218 taggaagtttcgccttcaaccac 240  Q
    ||||||||||||| |||||||||    
T  33136151 taggaagtttcgctttcaaccac 33136173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 38274051 - 38274153
Alignment:
Q  138 acagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaac 237  Q
    ||||||||||||| ||||||| |  |||||||||||| |||| | | ||||||||||  |||| ||||||||||||||||| |||| |||||||||||||    
T  38274051 acagagaaagaaaaagcattaaccaatgcccaacatattgaacggactaagccaccaagcatggtagttgaaagagagatttggaattttcgccttcaac 38274150  T
Q  238 cac 240  Q
    |||    
T  38274151 cac 38274153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 5958329 - 5958357
Alignment:
Q  178 aatgaattaagccaccatccatgatagtt 206  Q
    |||||||||||||||||||||||||||||    
T  5958329 aatgaattaagccaccatccatgatagtt 5958357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 45260 - 45163
Alignment:
Q  143 gaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaaccac 240  Q
    |||||||| ||||||||||| ||||||||||| |||| | ||||||||||||  |||| |||||||||||||||||||||| ||||||||||||||||    
T  45260 gaaagaaaaagcattagcttgtgcccaacataatgaacggattaagccaccaaacatggtagttgaaagagagattaggaattttcgccttcaaccac 45163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 11305958 - 11305855
Alignment:
Q  137 aacagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaa 236  Q
    |||| ||||||||||| ||||||| ||||||||||||| |||||| | ||||||||||  |||| |||||||| | ||||||||||| ||||||||||||    
T  11305958 aacaaagaaagaaataacattagcctatgcccaacatattgaatggactaagccaccaaacatggtagttgaaggggagattaggaattttcgccttcaa 11305859  T
Q  237 ccac 240  Q
    ||||    
T  11305858 ccac 11305855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 28043244 - 28043046
Alignment:
Q  20 taaaatgaaatatatcactcaattaaaaagttcttcctagtacaaggcgtatcaggaaaagaattagagtcataaatatatttacagaaagtgggaaaca 119  Q
    ||||||| ||||||| || |||| |||  |||||||||||||||||| |||||||||||||||  | ||||| |||||||| |||| | |   |||||||    
T  28043244 taaaatggaatatattacccaatcaaagtgttcttcctagtacaaggtgtatcaggaaaagaa-caaagtcacaaatatatgtacaaataaaaggaaaca 28043146  T
Q  120 aataaatagtgaat-gaaaacagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagatt 218  Q
    || ||| ||| | |  |||||||||||||||||||||| |||  ||  ||||||||||||| | | | | | ||||  |||| |||||||||||||||||    
T  28043145 aaaaaacagtaactaaaaaacagagaaagaaatagcatcagccgatatccaacatagtgaacggactgaactaccaagcatggtagttgaaagagagatt 28043046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 32097864 - 32097761
Alignment:
Q  136 aaacagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttca 235  Q
    ||||||||||||||| | |||||||  |||||||||||| |||| | | ||| ||||||   ||| ||||||||||||||||| | || |||||||||||    
T  32097864 aaacagagaaagaaaaaacattagccaatgcccaacatattgaacggactaa-ccaccaagtatggtagttgaaagagagatttgaaattttcgccttca 32097766  T
Q  236 accac 240  Q
    |||||    
T  32097765 accac 32097761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 14920744 - 14920844
Alignment:
Q  138 acagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaac 237  Q
    |||||||||||||   ||||| || ||||||||||||||||||||| ||||||||||  |||| || ||||| || ||||| |  | |||||||||||||    
T  14920744 acagagaaagaaaa--cattaactgatgcccaacatagtgaatgaactaagccaccaagcatggtaattgaaggatagatttgcgattttcgccttcaac 14920841  T
Q  238 cac 240  Q
    |||    
T  14920842 cac 14920844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 20535302 - 20535405
Alignment:
Q  137 aacagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaa 236  Q
    |||||||||||||||| ||||| |  ||| ||||||||||||| | | ||||||||||  |||||||||||||||||||||| | || ||||||||||||    
T  20535302 aacagagaaagaaataacattaaccgatgtccaacatagtgaacgtactaagccaccaagcatgatagttgaaagagagatttgcaattttcgccttcaa 20535401  T
Q  237 ccac 240  Q
    ||||    
T  20535402 ccac 20535405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 135 - 230
Target Start/End: Original strand, 21936569 - 21936663
Alignment:
Q  135 aaaacagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgc 230  Q
    ||||||||||||||| ||||||| || ||| | |||||||||||  | |||||||||||| ||| ||||||||| || ||| ||||||||||||||    
T  21936569 aaaacagagaaagaagtagcatt-gcctatactcaacatagtgaccggattaagccaccaaccacgatagttgacagcgaggttaggaagtttcgc 21936663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 32610023 - 32609950
Alignment:
Q  166 cccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaaccac 240  Q
    ||||||||| |||||| | ||||||||||  |||| |||||||||||| |||| |||| ||||||||||||||||    
T  32610023 cccaacatattgaatggactaagccaccaaacatggtagttgaaagagtgatttggaa-tttcgccttcaaccac 32609950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 20535077 - 20535140
Alignment:
Q  19 ctaaaatgaaatatatcactcaattaaaaagttcttcctagtacaaggcgtatcaggaaaagaa 82  Q
    |||||||||||||||| ||||||| ||||  |||||||||||| |||| |||  ||||||||||    
T  20535077 ctaaaatgaaatatattactcaatcaaaatattcttcctagtataaggtgtactaggaaaagaa 20535140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 240
Target Start/End: Original strand, 458935 - 459151
Alignment:
Q  29 atatatcactcaattaaaaagttcttcctagtacaaggcgtatcaggaaaagaattagagtcataaatatatttacagaaagtgggaaacaaataaatag 128  Q
    |||||| || |||| |||||||||||||||| |||||| ||| ||| |||||||  ||||||| ||| ||||||||| | || ||||||| || ||| |     
T  458935 atatattacccaatcaaaaagttcttcctagcacaaggagtaccagaaaaagaaaaagagtcaaaaacatatttacaaagagagggaaaccaaaaaaaaa 459034  T
Q  129 ---tgaatgaaaa--cagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaa 223  Q
       | ||  ||||  || ||||| ||||| ||||||| || |||||||||| |||| | | |||| ||||| |||||||||||||||||||||||| |||    
T  459035 acataaactaaaatacacagaaaaaaataacattagcctaggcccaacataatgaacggactaagtcaccaaccatgatagttgaaagagagattatgaa 459134  T
Q  224 gtttcgccttcaaccac 240  Q
     ||| || |||||||||    
T  459135 tttttgctttcaaccac 459151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 16871410 - 16871498
Alignment:
Q  19 ctaaaatgaaatatatcactcaattaaaaagttcttcctagtacaaggcgtatcaggaaaagaattagagtcataaatatatttacaga 107  Q
    |||||||||||||||| ||||||| ||||||||| |||| | |||||| ||| ||| |||||||  | ||||| ||| |||||||||||    
T  16871410 ctaaaatgaaatatattactcaatcaaaaagttcctcctggcacaaggtgtaccagaaaaagaacaatagtcacaaacatatttacaga 16871498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 447640 - 447713
Alignment:
Q  167 ccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaaccac 240  Q
    ||||||||||||||| ||||||||||||  |||| || ||||| |||||||| |  | ||||||||||||||||    
T  447640 ccaacatagtgaatggattaagccaccaaacatggtaattgaaggagagatttgcgattttcgccttcaaccac 447713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 240
Target Start/End: Original strand, 16345663 - 16345736
Alignment:
Q  167 ccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaaccac 240  Q
    ||||||||||||| | | ||||||||||  | || ||||||||||||||||| |  | ||||||||||||||||    
T  16345663 ccaacatagtgaacggactaagccaccaaacgtggtagttgaaagagagatttgcgattttcgccttcaaccac 16345736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 291106 - 291020
Alignment:
Q  154 cattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttcaaccac 240  Q
    |||||||  |||||||||||| |||| | | ||||||||||  |||| |||||||||||||||||||||| ||||||||||||||||    
T  291106 cattagccaatgcccaacatattgaacggactaagccaccaagcatggtagttgaaagagagattaggaattttcgccttcaaccac 291020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 291243 - 291179
Alignment:
Q  19 ctaaaatgaaatatatcactcaattaaaa-agttcttcctagtacaaggcgtatcaggaaaagaa 82  Q
    |||||||| ||||||| |||||| | ||| |||||||||||| |||||| || ||||||||||||    
T  291243 ctaaaatggaatatattactcaaatcaaagagttcttcctagcacaaggtgtgtcaggaaaagaa 291179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 384 - 280
Alignment:
Q  135 aaaacagagaaagaaatagcattagcttatgcccaacatagtgaatgaattaagccaccatccatgatagttgaaagagagattaggaagtttcgccttc 234  Q
    |||||| | ||||||| ||||||||   ||| ||||||||||||| | ||||||||||||  ||||||||||||| ||||||||||  | ||||||||||    
T  384 aaaacatacaaagaaaaagcattagtcgatgtccaacatagtgaacggattaagccaccaaacatgatagttgaaggagagattagctattttcgccttc 285  T
Q  235 aacca 239  Q
    |||||    
T  284 aacca 280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University