View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14639_low_2 (Length: 638)
Name: NF14639_low_2
Description: NF14639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14639_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 37 - 624
Target Start/End: Complemental strand, 40657662 - 40657091
Alignment:
| Q |
37 |
agaagtgtagatcccaccagatatatacacctttaattgattgtaaattatttgttttacagaaaattaattgtaaattaataactcccacttcaatggg |
136 |
Q |
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| T |
40657662 |
agaagtgtagatccggtcagatatatacaccgttaattgattgtaaattatttgttttacagaaaattaattgtaaattaataactcccacttcaatggg |
40657563 |
T |
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| Q |
137 |
attttaattttgagttgttaagtgtcactacaattgcctcataaagaaaagtgtgtcacttcaagtgtgtgaatatgatactagtgataatctcttgcag |
236 |
Q |
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| T |
40657562 |
attttaattgtgagttgttaagtgtcactacaattgcctcataaagaaaagtgtgtcacttcaagtgtgtgaatacgatactagtgataacctcttgcag |
40657463 |
T |
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| Q |
237 |
tctactatatgatattgcctcattcagatgacaatataaaaaattgtgttttagacttgttcatccaatatgatattggtggtgtgaaaagtaaactcag |
336 |
Q |
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| T |
40657462 |
tctactatat-------------tcagatgacaatataaaaaattgt--tttagacttgttcatccaatatgatattgggggtgtgaaaagtaaactcag |
40657378 |
T |
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| Q |
337 |
aaaattactaccactctaacccgatatagtgttgagcctatatgacacaacaagcccatgattttttaagctttaaacgacgtcgtatcagaatcagatt |
436 |
Q |
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| T |
40657377 |
aaaattactaccactctaacccgttattgtattgagcctatatgacacaa---gcccatgattttttaagctttaaacgacgtcgtatcagaatcagatt |
40657281 |
T |
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| Q |
437 |
cagattttccatcgctttccaatataaaaccag--tttccctcatttcgatttttccccgctcaaatttccgttgctttctttctcgcattttcgatttt |
534 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
40657280 |
cagattttccatcgctttccaatataaaagcagagtttccctcatttcgatttttccccgctcaaatttacgttactttctttctcgcattttcgatttt |
40657181 |
T |
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| Q |
535 |
cactttcacttcaaattttctcgctccttcgtttacttgctaagctcagaaacaaggtagatcgctgaaaatggaggatatggatgatga |
624 |
Q |
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| T |
40657180 |
cactttcacttcaaattttctcgctcctacgtttacttgctaagctcagaaacaaggtagatcgctgaaaatggaggatatggatgatga |
40657091 |
T |
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