View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14639_low_3 (Length: 433)
Name: NF14639_low_3
Description: NF14639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14639_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 79 - 421
Target Start/End: Complemental strand, 42702685 - 42702343
Alignment:
| Q |
79 |
gaaatactaatcctgaaatttggaacatccaatctcgatcctacagccacagacgagctgattatgtgcatgcgtcgaattattaactgcagcaaatcca |
178 |
Q |
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| T |
42702685 |
gaaatactaattttgaaatttggatcatccaatctcgatccaacggccaccgacgagctgattatgtgaatgcgtagaattattaactgcagcaaatcca |
42702586 |
T |
|
| Q |
179 |
aattcctcaaacattcaggagttacataattttcagttctcatttccaagcacaagaagcaaccaaatctctattcatccaaccaagatatagagctcca |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42702585 |
aattcctcaaacattcaggagttacataattttcagttctcatttccaagcacaagaagcaaccaaatctctattcatccaaccaagatatagagctcca |
42702486 |
T |
|
| Q |
279 |
tctctttcttgaagtctatatctatcactgtagttttcaagcaatttctttattgtaccattcaccaaagaactcagagggtaaggagtgaaaccagcca |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42702485 |
tctctttcttgaagtctatatctatcactgtagttttcaagcaatttctttattgtaccattcaccaaagaactcagagggtaaggagtgaaaccagcca |
42702386 |
T |
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| Q |
379 |
ttgcaaatcttgacctccacttccctagcagctcgtgtcgttc |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42702385 |
ttgcaaatcttgacctccacttccctagcagctcgtgtcgttc |
42702343 |
T |
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