View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14639_low_8 (Length: 378)
Name: NF14639_low_8
Description: NF14639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14639_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 2592088 - 2592423
Alignment:
| Q |
17 |
caatcttgtaatatggatgaggaaggaggagagttattaacattggagtcattgcaattgcaaagacaagaagagttgaatgaatgggtggaaactcaac |
116 |
Q |
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| T |
2592088 |
caatcttgtaatatggatgaggaaggaggagagttattaacattggagtcattgcaattgcaaagacaagaagagttgaatgaatgggtggaaactcaac |
2592187 |
T |
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| Q |
117 |
aacaatgtcctagctttattttcagctgggagagtgttgaaggacaaattggaggtgaagaacaagtactagtaccaaactcatcacatatgggaacacc |
216 |
Q |
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| T |
2592188 |
aacaatgtcctagctttattttcagctgggagagtgttgaaggacaaattggaggtgaagaacaagtactagtaccaaactcatcacatatgggaacacc |
2592287 |
T |
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| Q |
217 |
taattcactttctccttttccttcttcactattatgagataagttattaattaattaagaagattttcttctgattaattatatatatctacctaactag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592288 |
taattcactttctccttttccttcttcactattatgagataagttattaattaattaagaagattttcttctgattaattatatatatctacctaactag |
2592387 |
T |
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| Q |
317 |
gaagagcttgttccttctcattttgattttccacac |
352 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2592388 |
gaagagcttgttccttctcattttgattttccacac |
2592423 |
T |
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