View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1463_high_4 (Length: 218)
Name: NF1463_high_4
Description: NF1463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1463_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 20983408 - 20983222
Alignment:
| Q |
15 |
ataggtagtggtggtgttgtgcatgtgagaatggagggtaggatgaagaagtatagacaagtgagtcctgataaagctaaggtttggactgagaaagcac |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20983408 |
ataggtagtggtggtgttgtgcatgtgagaatggagggtaggatgaagaagtatagacaagtgagtcctgatagggctaaggtttggactgagaaagcac |
20983309 |
T |
|
| Q |
115 |
caaaatatcaacataatttgaaggtgcctgtgatttattatctttgtagaaataggcaacttgaacatcctcatttcatggaggttc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20983308 |
caaaatatcaacataatttgaaggtgcctgtgatttattatctttgtagaaataggcaacttgaacatcctcatttcatggaggttc |
20983222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 35459645 - 35459712
Alignment:
| Q |
134 |
gaaggtgcctgtgatttattatctttgtagaaataggcaacttgaacatcctcatttcatggaggttc |
201 |
Q |
| |
|
|||||| ||||| |||| |||||||| || ||||| || |||||||||||||||||||||||||||| |
|
|
| T |
35459645 |
gaaggttcctgttgtttactatctttgcaggaatagacagcttgaacatcctcatttcatggaggttc |
35459712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University