View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1463_low_1 (Length: 604)

Name: NF1463_low_1
Description: NF1463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1463_low_1
NF1463_low_1
[»] chr4 (15 HSPs)
chr4 (228-596)||(42756658-42757032)
chr4 (80-147)||(42757113-42757180)
chr4 (278-522)||(11560140-11560383)
chr4 (364-522)||(13909799-13909957)
chr4 (364-522)||(24180591-24180749)
chr4 (341-492)||(35648520-35648671)
chr4 (341-522)||(12576835-12577016)
chr4 (341-506)||(24182429-24182594)
chr4 (441-492)||(22681162-22681213)
chr4 (341-515)||(28474811-28474986)
chr4 (454-512)||(2041166-2041224)
chr4 (339-508)||(13239976-13240143)
chr4 (468-514)||(50159145-50159191)
chr4 (230-299)||(39977911-39977979)
chr4 (443-515)||(285179-285251)
[»] scaffold1315 (2 HSPs)
scaffold1315 (228-591)||(1144-1497)
scaffold1315 (80-147)||(996-1063)
[»] scaffold1293 (2 HSPs)
scaffold1293 (228-591)||(574-927)
scaffold1293 (80-147)||(1008-1075)
[»] chr2 (16 HSPs)
chr2 (229-584)||(6466792-6467148)
chr2 (364-522)||(45661111-45661269)
chr2 (341-522)||(5788011-5788192)
chr2 (523-596)||(20442863-20442936)
chr2 (84-146)||(6466646-6466708)
chr2 (364-522)||(45662556-45662713)
chr2 (355-506)||(14872722-14872873)
chr2 (355-522)||(45053988-45054155)
chr2 (441-510)||(41752905-41752974)
chr2 (345-490)||(41753953-41754098)
chr2 (356-487)||(36720074-36720205)
chr2 (360-406)||(25546950-25546996)
chr2 (455-492)||(39403381-39403418)
chr2 (341-405)||(14873425-14873489)
chr2 (366-505)||(45058390-45058530)
chr2 (336-483)||(45275944-45276089)
[»] scaffold0169 (1 HSPs)
scaffold0169 (317-515)||(5082-5279)
[»] chr8 (24 HSPs)
chr8 (16-77)||(43439377-43439438)
chr8 (364-522)||(43215467-43215625)
chr8 (353-506)||(18431492-18431645)
chr8 (364-507)||(45528202-45528345)
chr8 (364-522)||(15275927-15276084)
chr8 (364-522)||(15456296-15456453)
chr8 (341-490)||(38291757-38291906)
chr8 (355-492)||(15276763-15276900)
chr8 (355-492)||(15457132-15457269)
chr8 (333-485)||(760653-760805)
chr8 (322-398)||(5685854-5685930)
chr8 (419-492)||(19263301-19263374)
chr8 (441-510)||(23140535-23140604)
chr8 (462-515)||(38291332-38291385)
chr8 (322-404)||(45247753-45247835)
chr8 (349-406)||(14715279-14715336)
chr8 (345-490)||(23141588-23141733)
chr8 (442-510)||(13758981-13759049)
chr8 (340-395)||(38291216-38291271)
chr8 (434-492)||(20874610-20874668)
chr8 (341-515)||(36990271-36990444)
chr8 (417-522)||(42797046-42797151)
chr8 (332-392)||(23686596-23686656)
chr8 (333-373)||(32916816-32916856)
[»] chr1 (6 HSPs)
chr1 (339-508)||(31089469-31089639)
chr1 (230-506)||(16852766-16853042)
chr1 (339-508)||(27342183-27342355)
chr1 (230-292)||(22635700-22635762)
chr1 (434-482)||(11976911-11976959)
chr1 (355-492)||(43387042-43387179)
[»] chr3 (14 HSPs)
chr3 (355-506)||(12125429-12125580)
chr3 (376-522)||(9265297-9265443)
chr3 (364-522)||(9266725-9266882)
chr3 (341-492)||(20934184-20934335)
chr3 (330-507)||(6087136-6087313)
chr3 (341-506)||(6436831-6436996)
chr3 (364-506)||(9262779-9262921)
chr3 (419-492)||(50419-50492)
chr3 (455-514)||(14240497-14240556)
chr3 (348-411)||(431968-432031)
chr3 (345-404)||(25225358-25225417)
chr3 (341-405)||(9263473-9263537)
chr3 (321-380)||(10973269-10973326)
chr3 (332-392)||(39187289-39187349)
[»] scaffold0159 (1 HSPs)
scaffold0159 (341-522)||(32384-32565)
[»] chr6 (11 HSPs)
chr6 (523-596)||(24360852-24360925)
chr6 (355-497)||(11554328-11554470)
chr6 (355-497)||(4852808-4852950)
chr6 (419-489)||(2970421-2970491)
chr6 (414-490)||(18089937-18090013)
chr6 (341-506)||(26596659-26596824)
chr6 (364-515)||(34515068-34515220)
chr6 (349-487)||(24397910-24398047)
chr6 (420-486)||(26595896-26595962)
chr6 (345-490)||(1599831-1599976)
chr6 (419-523)||(29214195-29214299)
[»] chr7 (13 HSPs)
chr7 (355-507)||(17474599-17474751)
chr7 (355-507)||(17578463-17578615)
chr7 (377-514)||(6202346-6202483)
chr7 (355-507)||(17510083-17510235)
chr7 (355-507)||(17542979-17543131)
chr7 (317-430)||(42078967-42079082)
chr7 (364-513)||(38788064-38788213)
chr7 (321-382)||(15464396-15464457)
chr7 (453-522)||(48553243-48553312)
chr7 (363-510)||(24708450-24708597)
chr7 (441-484)||(27938832-27938875)
chr7 (341-418)||(6188756-6188833)
chr7 (341-418)||(6195272-6195349)
[»] scaffold0061 (1 HSPs)
scaffold0061 (412-507)||(45583-45678)
[»] scaffold0017 (1 HSPs)
scaffold0017 (412-507)||(153109-153204)
[»] scaffold0191 (1 HSPs)
scaffold0191 (417-522)||(12247-12352)
[»] scaffold0050 (1 HSPs)
scaffold0050 (417-513)||(10561-10657)
[»] scaffold1312 (1 HSPs)
scaffold1312 (366-492)||(2-128)
[»] chr5 (5 HSPs)
chr5 (317-395)||(15301534-15301611)
chr5 (454-492)||(9048715-9048753)
chr5 (341-492)||(24541767-24541918)
chr5 (341-492)||(38015875-38016026)
chr5 (384-481)||(38012839-38012936)
[»] scaffold0377 (1 HSPs)
scaffold0377 (341-430)||(12561-12652)
[»] scaffold0074 (1 HSPs)
scaffold0074 (347-487)||(30831-30970)
[»] scaffold0024 (1 HSPs)
scaffold0024 (455-515)||(46261-46321)
[»] scaffold0380 (1 HSPs)
scaffold0380 (341-515)||(15251-15425)
[»] scaffold0284 (2 HSPs)
scaffold0284 (391-489)||(7539-7637)
scaffold0284 (322-449)||(6413-6540)
[»] scaffold1743 (1 HSPs)
scaffold1743 (419-492)||(185-258)
[»] scaffold0012 (1 HSPs)
scaffold0012 (349-406)||(95951-96008)
[»] scaffold0051 (1 HSPs)
scaffold0051 (333-380)||(17307-17354)
[»] scaffold1804 (1 HSPs)
scaffold1804 (440-478)||(1034-1072)
[»] scaffold0211 (1 HSPs)
scaffold0211 (470-507)||(16017-16054)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 228 - 596
Target Start/End: Complemental strand, 42757032 - 42756658
Alignment:
Q  228 ctaaagaaagaaacaaagacaccc----ctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttccttctcaccat 323  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||    
T  42757032 ctaaagaaagaaacaaagacacccacctctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatcttatttttctatctcaccat 42756933  T
Q  324 atcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaaca 423  Q
    ||||| ||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  42756932 atcatagacacggagaatctcacacttaagggagagatgttaatgtgtcatttgtgagtaaaacttctacattggatgcaagactatatattgagcaaca 42756833  T
Q  424 tataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat- 522  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||  |||||     
T  42756832 tataagttaaatgacaaatatacctaaagtcttaaggttttggatgaagatgtggtgtcaatctcacttatggggtttctctaagccaaatgtgatgatt 42756733  T
Q  523 -aagtcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcctatgct 596  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42756732 caagtcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcctttgct 42756658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 42757180 - 42757113
Alignment:
Q  80 aaaatcataaattatcagcaactcattctattaattatattgtcaattataaaacacactctccttag 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  42757180 aaaatcataaattatcagcaactcattctattaattatattgtcaatgataaaacacactcttcttag 42757113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 278 - 522
Target Start/End: Original strand, 11560140 - 11560383
Alignment:
Q  278 ttttttaccatgttgttcctcttatattatttttccttctcaccatatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttg 377  Q
    |||||||||||||||| ||||| |  |||||||||  |||||||| ||||   |   | ||| || ||||||||||||||||||| |||||||||||  |    
T  11560140 ttttttaccatgttgtgcctctgactttatttttctatctcaccaaatcacaaatataaagagtcccacacttaagggagagatgttaatgtgtcatggg 11560239  T
Q  378 tgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtg 477  Q
    ||||| |||||| |||||||||||||||| |||| ||| | ||| ||||| || | ||||||||||||| |   |||||||||||||   |||||||||     
T  11560240 tgagttaaacttatacattggatgcaagagtatatattga-caatatatacgtgagatgacaaatatacttgatgtcttaaggttttaagtgaagatgta 11560338  T
Q  478 gtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 522  Q
    || |||||  || || | | ||||||||||| ||||||| |||||    
T  11560339 gtttcaataccaattctagaatttctcttagtcaaatgcgatgat 11560383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 364 - 522
Target Start/End: Original strand, 13909799 - 13909957
Alignment:
Q  364 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 463  Q
    ||||||| ||| ||||||| || ||| |||||| || |||| | || | ||| |||||||||||||| | ||| | |||||||||   |||||||| |||    
T  13909799 taatgtgacatgtgtgagttaaccttttacatttgacgcaaaaataaatattgagcaacatataagtgagatgtccaatatacctgatgtcttaagattt 13909898  T
Q  464 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 522  Q
    || ||||||||||||||||||||||| || |||| |||||||||| |||||| ||||||    
T  13909899 tgaatgaagatgtggtgtcaatctcatttgtggggtttctcttagacaaatgtaatgat 13909957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 364 - 522
Target Start/End: Complemental strand, 24180749 - 24180591
Alignment:
Q  364 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 463  Q
    ||||||| ||| ||||||| || ||| |||||| ||||||||| || | ||| |||||||||||| | ||||| | ||||||||||   |||||||||||    
T  24180749 taatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataactgaaatgtccaatatacctaatatcttaaggttt 24180650  T
Q  464 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 522  Q
    || ||||| |||| ||||||| |||| || |||| ||||||||||  ||||| ||||||    
T  24180649 tgaatgaaaatgtagtgtcaaactcatttttggggtttctcttagataaatgtaatgat 24180591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 341 - 492
Target Start/End: Complemental strand, 35648671 - 35648520
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 440  Q
    |||||||| ||||||||||||| | |||| |||| ||||||| |||||||||||||| | |||| | |||| ||| |||||||||||||  | | ||  |    
T  35648671 tctcacacgtaagggagagatgtttatgtttcatgtgtgagttaaacttctacattgtaagcaatagtatatattgagcaacatataagcgagaagaaca 35648572  T
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 492  Q
    |||||||||  | |||||| ||||   | |||||||||||||||||||||||    
T  35648571 atatacctaatgccttaagattttacgtaaagatgtggtgtcaatctcactt 35648520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 341 - 522
Target Start/End: Complemental strand, 12577016 - 12576835
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 440  Q
    ||||||||||||  ||| |||| |||||||||||  | |||| |||||| ||| |||||||||||| |  | ||| | |||||||| ||| | |||||      
T  12577016 tctcacacttaaaagagcgatgataatgtgtcataggggagttaaacttttacgttggatgcaagagtggatattaaacaacatattagtgagatgaccc 12576917  T
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 522  Q
    |||||||||  ||||||| ||||||| | || || |||| ||||||||| || ||||  |||||||||||||||| ||||||    
T  12576916 atatacctattgtcttaaagttttgggtcaaaatatggtctcaatctcatttgtggggattctcttagccaaatgtaatgat 12576835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 341 - 506
Target Start/End: Complemental strand, 24182594 - 24182429
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 440  Q
    |||||||| |||  |||| ||| ||||||||||| ||| ||| |||||||||||||| | |||| | |||| ||| || |||||  | || | ||||| |    
T  24182594 tctcacacataatagagatatgttaatgtgtcatgtgtaagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatgacta 24182495  T
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 506  Q
    |||||| ||  || |||||||||  | ||||||||||||||||||||||||| | |||||||||||    
T  24182494 atatacataatgtattaaggtttcaggtgaagatgtggtgtcaatctcacttgtcggatttctctt 24182429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 492
Target Start/End: Complemental strand, 22681213 - 22681162
Alignment:
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 492  Q
    |||||||||  |||||||||||| || || ||||||||||||||||||||||    
T  22681213 atatacctaatgtcttaaggtttagggtggagatgtggtgtcaatctcactt 22681162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 515
Target Start/End: Complemental strand, 28474986 - 28474811
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 440  Q
    |||||||| |||  |||| ||| | ||||||||| ||||||| |||||||||||||| | |||| | |||| ||| ||  ||||  | || | ||| | |    
T  28474986 tctcacacataatagagatatgttgatgtgtcatgtgtgagttaaacttctacattgaaagcaaaagtatatattgagatacatgaatgtgagatggcta 28474887  T
Q  441 atatacctagagtctta-aggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 515  Q
    |||||| ||  |||||  ||||||||  |||||||||||||||||||||| || |||| |||||||| | ||||||    
T  28474886 atatacataatgtctttcaggttttgagtgaagatgtggtgtcaatctcatttttggggtttctcttggtcaaatg 28474811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 512
Target Start/End: Original strand, 2041166 - 2041224
Alignment:
Q  454 cttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaa 512  Q
    ||||||||||||| ||||||||||||||| | ||||||| || | || |||||||||||    
T  2041166 cttaaggttttgggtgaagatgtggtgtccaactcacttgtgtggttgctcttagccaa 2041224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 339 - 508
Target Start/End: Complemental strand, 13240143 - 13239976
Alignment:
Q  339 aatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgac 438  Q
    ||||||||| |||||||||||||  | ||||  |||  |||||| |||||||| | |||||||||| | |||| ||| || |||| ||  |  | || |     
T  13240143 aatctcacatttaagggagagatatttatgttccat--gtgagttaaacttctccgttggatgcaatagtatatattgagtaacaaatgcgcgagataaa 13240046  T
Q  439 aaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttag 508  Q
    ||||||||||| ||||||||| |||| |  ||||||||| | |||||||||||| | || ||||||||||    
T  13240045 aaatatacctaaagtcttaagattttaggcgaagatgtgatctcaatctcacttgtagggtttctcttag 13239976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 514
Target Start/End: Original strand, 50159145 - 50159191
Alignment:
Q  468 tgaagatgtggtgtcaatctcacttatgggatttctcttagccaaat 514  Q
    |||||||||||||||||||| ||||||| | |||||||||| |||||    
T  50159145 tgaagatgtggtgtcaatcttacttatgaggtttctcttagtcaaat 50159191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 39977911 - 39977979
Alignment:
Q  230 aaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctct 299  Q
    ||||||||||| ||| ||| |||||| |||||  ||||||||| ||| |||||||||||||||| |||||    
T  39977911 aaagaaagaaaaaaa-acatccctctttgaaactgccaccaacccaccttttttaccatgttgtgcctct 39977979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 515
Target Start/End: Original strand, 285179 - 285251
Alignment:
Q  443 atacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 515  Q
    |||||||  ||||||||||||||||| || || ||| ||| |||||| || || | |||||||||||||||||    
T  285179 atacctaatgtcttaaggttttggatcaaaatatggcgtcgatctcatttgtgaggtttctcttagccaaatg 285251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 228 - 591
Target Start/End: Original strand, 1144 - 1497
Alignment:
Q  228 ctaaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttccttctcaccatatca 327  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||  ||| |||||||||    
T  1144 ctaaagaaagaaacaaagacacccttctacgaaatagccaccaactcacattttttatcatgttgttcctcttatcttatttttctatcttaccatatca 1243  T
Q  328 tggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatata 427  Q
    | ||| || | |||||||||||||| |||||            ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||    
T  1244 tagacacataaaatctcacacttaacggaga------------tcatttgtgagtaaaacttctacattggatgcaagactatatattgtgcaacatata 1331  T
Q  428 agttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat--aag 525  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||  |||    
T  1332 agttaaatgacaaatatatctaaagtcttaaggttttggatgaagatgtggtgtcaatctcacttatggggtttctcttagccaaatgtgatgattcaag 1431  T
Q  526 tcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcct 591  Q
    |||||| || ||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  1432 tcattatagactccctcagagctctaatcattatgataaattattgtcttaatttttggttgtcct 1497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 80 - 147
Target Start/End: Original strand, 996 - 1063
Alignment:
Q  80 aaaatcataaattatcagcaactcattctattaattatattgtcaattataaaacacactctccttag 147  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  996 aaaatcataaattatcagcaactcattttattaattatattgtcaatgataaaacacactctccttag 1063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 228 - 591
Target Start/End: Complemental strand, 927 - 574
Alignment:
Q  228 ctaaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttccttctcaccatatca 327  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||  ||| |||||||||    
T  927 ctaaagaaagaaacaaagacacccttctacgaaatagccaccaactcacattttttatcatgttgttcctcttatcttatttttctatcttaccatatca 828  T
Q  328 tggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatata 427  Q
    | ||| || | |||||||||||||| |||||            ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||    
T  827 tagacacataaaatctcacacttaacggaga------------tcatttgtgagtaaaacttctacattggatgcaagactatatattgtgcaacatata 740  T
Q  428 agttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat--aag 525  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||  |||    
T  739 agttaaatgacaaatatatctaaagtcttaaggttttggatgaagatgtggtgtcaatctcacttatggggtttctcttagccaaatgtgatgattcaag 640  T
Q  526 tcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcct 591  Q
    |||||| || ||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  639 tcattatagactccctcagagctctaatcattatgataaattattgtcttaatttttggttgtcct 574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 1075 - 1008
Alignment:
Q  80 aaaatcataaattatcagcaactcattctattaattatattgtcaattataaaacacactctccttag 147  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||    
T  1075 aaaatcataaattatcagcaactcattttattaattatattgtcaatgataaaacacactcttcttag 1008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 229 - 584
Target Start/End: Original strand, 6466792 - 6467148
Alignment:
Q  229 taaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttccttctcaccatatcat 328  Q
    ||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||| |||||||||| ||||| ||||||||    
T  6466792 taaagaaaggaacaaagacacccctctatgtaatagtcaccaactcacattttt-accattttgttcctcttatcttatttttccatctcaacatatcat 6466890  T
Q  329 ggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataa 428  Q
     |||  |||||||||| | |||||||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||| ||| ||||| ||||||    
T  6466891 agacatagagaatctcgcccttaagggtgagatgataatgtgtcatttatgagtaaaacttctacattggatccaagagtatatattgagcaagatataa 6466990  T
Q  429 gttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat--aagt 526  Q
     | |||||||||||||| |||  |||||||| ||||||||| ||||||||||||||||||||||||  | ||||||||| ||||||   |||||  ||||    
T  6466991 atgaaatgacaaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgatgatccaagt 6467090  T
Q  527 cattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttgg 584  Q
    ||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||    
T  6467091 cattacaggatccctcggagctccaaatattatgataaattgttatcttagtttttgg 6467148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 364 - 522
Target Start/End: Original strand, 45661111 - 45661269
Alignment:
Q  364 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 463  Q
    ||||||| ||| ||||||| || ||| |||||| ||||||||| || | ||| |||||||||||||| | ||| | ||||||| ||  |||||||| |||    
T  45661111 taatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttaagattt 45661210  T
Q  464 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 522  Q
    || ||||| |||| |||||||||||| ||||||| |||||||||| |||||| ||||||    
T  45661211 tgaatgaaaatgtagtgtcaatctcatttatggggtttctcttagacaaatgtaatgat 45661269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 522
Target Start/End: Complemental strand, 5788192 - 5788011
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 440  Q
    |||| ||||| ||||| ||| | ||||||||||  ||||| | |||||||||||||  ||| |||| |||| ||| |||||||||||||| | |||||||    
T  5788192 tctcgcacttgagggaaagacgttaatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatgacaa 5788093  T
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 522  Q
    ||||||  | |||||||||||||||  |  ||||||| ||| ||| | || |||||  |||||||| | |||||||||||||    
T  5788092 atatactcaaagtcttaaggttttgagtttagatgtgatgtgaattttacgtatggagtttctcttggtcaaatgcaatgat 5788011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 523 - 596
Target Start/End: Original strand, 20442863 - 20442936
Alignment:
Q  523 aagtcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcctatgct 596  Q
    |||||||||||||||||||  |||||||||||||||||||||| |||||||||| |||| ||||||||| ||||    
T  20442863 aagtcattacaggctcccttagagctccaatcattatgataaactgttgtcttaattttcggttgtcctttgct 20442936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 6466646 - 6466708
Alignment:
Q  84 tcataaattatcagcaactcattctattaattatattgtcaattataaaacacactctcctta 146  Q
    |||||||||||| ||||||||||||||||||||||||||||  |||||||||||| |||||||    
T  6466646 tcataaattatctgcaactcattctattaattatattgtcacatataaaacacaccctcctta 6466708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 364 - 522
Target Start/End: Original strand, 45662556 - 45662713
Alignment:
Q  364 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 463  Q
    ||||||| ||| ||||||| || ||| |||||| |||| |||| || | ||| |||||| ||||||| | ||| | ||||||| ||  |||||||| |||    
T  45662556 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatattgagcaacgtataagtaagatgtccaatatacgtaatgtcttaagattt 45662655  T
Q  464 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 522  Q
    || ||||||||||||||||||||||| || |||| |||||||||  |||||| ||||||    
T  45662656 tgaatgaagatgtggtgtcaatctcaattgtggg-tttctcttaaacaaatgtaatgat 45662713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 355 - 506
Target Start/End: Original strand, 14872722 - 14872873
Alignment:
Q  355 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 454  Q
    |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||| || |||||  | || | ||||| ||||||| ||  ||     
T  14872722 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 14872821  T
Q  455 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 506  Q
    ||||||  || | ||||||||||||||||||||||||| | |||||||||||    
T  14872822 ttaaggagttaggtgaagatgtggtgtcaatctcacttgtcggatttctctt 14872873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 355 - 522
Target Start/End: Complemental strand, 45054155 - 45053988
Alignment:
Q  355 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 454  Q
    |||||| | ||||||| ||| ||||||| || ||| |||||| || |||| | || | ||| |||||||||||||| | ||    |||||||||   |||    
T  45054155 gagagaagttaatgtgacatgtgtgagttaaccttttacatttgacgcaaaagtaaatattgagcaacatataagtgagatattcaatatacctgatgtc 45054056  T
Q  455 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 522  Q
    ||||| ||||| ||||||||||||||||||||||| || |||| |||| ||||| |||||| ||||||    
T  45054055 ttaagattttgaatgaagatgtggtgtcaatctcatttgtggggtttcacttagacaaatgtaatgat 45053988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 441 - 510
Target Start/End: Complemental strand, 41752974 - 41752905
Alignment:
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagcc 510  Q
    |||||||||  ||||||||||||||| | || ||||||||||||||||| |||||||| |||||||||||    
T  41752974 atatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctcatttatgggaattctcttagcc 41752905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 345 - 490
Target Start/End: Complemental strand, 41754098 - 41753953
Alignment:
Q  345 acacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatat 444  Q
    |||||| ||||| ||| | ||||||||||| ||| | | |||||| ||||||  ||| |||| || | ||| |||||||||||||| | ||||| |||||    
T  41754098 acacttgagggaaagacgttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatataagtgagatgactaatat 41753999  T
Q  445 acctagagtcttaaggttttggatgaagatgtggtgtcaatctcac 490  Q
    | | |  |||||||||||||| ||  ||||||||||| ||| ||||    
T  41753998 atccaatgtcttaaggttttgaatttagatgtggtgtgaatttcac 41753953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 487
Target Start/End: Original strand, 36720074 - 36720205
Alignment:
Q  356 agagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtct 455  Q
    ||||||| ||||||||||  ||||||| ||| ||||||| ||  ||||| | ||||  || |||||||||||||| | ||||   |||||||||  ||||    
T  36720074 agagatgttaatgtgtcaagtgtgagttaaaattctacaatgtgtgcaataatatatgttgagcaacatataagtgagatgatccatatacctaatgtct 36720173  T
Q  456 taaggttttggatgaagatgtggtgtcaatct 487  Q
     |||  ||||| |||||||||| |||||||||    
T  36720174 gaagactttgggtgaagatgtgatgtcaatct 36720205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 25546950 - 25546996
Alignment:
Q  360 atggtaatgtgtcatttgtgagtaaaacttctacattggatgcaaga 406  Q
    ||||||||||||||  ||||||| ||| |||||||||||||||||||    
T  25546950 atggtaatgtgtcaaatgtgagttaaagttctacattggatgcaaga 25546996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 492
Target Start/End: Complemental strand, 39403418 - 39403381
Alignment:
Q  455 ttaaggttttggatgaagatgtggtgtcaatctcactt 492  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  39403418 ttaatgttttggatgaacatgtggtgtcaatctcactt 39403381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 405
Target Start/End: Original strand, 14873425 - 14873489
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaag 405  Q
    ||||||||||| |||||||||| ||| |||||| |||||| | ||| ||| | ||||||||||||    
T  14873425 tctcacacttatgggagagatgttaaagtgtcaattgtgactcaaagttccaaattggatgcaag 14873489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 505
Target Start/End: Complemental strand, 45058530 - 45058390
Alignment:
Q  366 atgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtctta-aggtttt 464  Q
    ||||||||| |||  || |||||||||||||||| |||| | |||| ||| || |||||  |||| | ||| | ||||||| ||  |||||  |||||||    
T  45058530 atgtgtcatgtgtcggttaaacttctacattggaagcaaaagtatatattgagaaacatgaaagtgagatggccaatatacataatgtctttcaggtttt 45058431  T
Q  465 ggatgaagatgtggtgtcaatctcacttatgggatttctct 505  Q
    |  |||||||||| ||||||||||| || |||| |||||||    
T  45058430 gagtgaagatgtgatgtcaatctcatttttggggtttctct 45058390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 483
Target Start/End: Original strand, 45275944 - 45276089
Alignment:
Q  336 gagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaat 435  Q
    |||| ||||||||||| |  ||||||  ||||||||||| ||||| |||||  |||||||| ||||||||| || | ||| | |||| | ||||| | ||    
T  45275944 gagagtctcacacttaggcaagagatattaatgtgtcatgtgtgaataaaatatctacatttgatgcaagagtagacattaaacaacgtgtaagtgagat 45276043  T
Q  436 gacaaatatacctagagtcttaaggttttggatgaagatgtggtgtca 483  Q
    ||| ||||||| |  | | |||||||||||  ||||||| ||||||||    
T  45276044 gaccaatatactt--aatgttaaggttttgagtgaagatatggtgtca 45276089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 317 - 515
Target Start/End: Original strand, 5082 - 5279
Alignment:
Q  317 tcaccatatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattc 416  Q
    |||||||||| | ||  |||||| ||||||| ||||| ||||||||  ||||||||||  |||||| |||| |||||||||||||||||| |||| |||     
T  5082 tcaccatatcttagatacagagagtctcacaattaagcgagagatgagaatgtgtcatgcgtgagttaaacatctacattggatgcaagaatatacattg 5181  T
Q  417 agcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 515  Q
    | |||||||||||| || |||| ||||||||||  ||||||   |||||| |||| ||||||||||||| ||| || | || |||||||||| ||||||    
T  5182 aacaacatataagtgaagtgaccaatatacctaatgtcttactattttgggtgaatatgtggtgtcaatatcatttgttgg-tttctcttagtcaaatg 5279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 43439438 - 43439377
Alignment:
Q  16 agaatcaatttacggagagatctcctgtaaatgataagtttaagttaaaacttgtttgctat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43439438 agaatcaatttacggagagatctcctgtaaatgataagtttaagttaaaacttgtttgctat 43439377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 364 - 522
Target Start/End: Complemental strand, 43215625 - 43215467
Alignment:
Q  364 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 463  Q
    ||||||| ||| ||||||| || ||| |||||| ||||||||| || | ||| |||||||||||||| | ||| | ||||||| ||  |||||| |||||    
T  43215625 taatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttacggttt 43215526  T
Q  464 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 522  Q
    || ||||| |||| |||||||||||| ||||||| || ||||||| |||||| ||||||    
T  43215525 tgaatgaaaatgtagtgtcaatctcatttatggggttcctcttagacaaatgtaatgat 43215467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 353 - 506
Target Start/End: Complemental strand, 18431645 - 18431492
Alignment:
Q  353 gggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagag 452  Q
    |||||||||| ||||||||||| ||||||| |||||||||  || ||||||||| |||| ||| |||||||||||  | | ||||| ||||||||||  |    
T  18431645 gggagagatgttaatgtgtcatgtgtgagttaaacttctaattttgatgcaagagtatatattgagcaacatatatttgagatgaccaatatacctaatg 18431546  T
Q  453 tcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 506  Q
    |||| ||||||  |||  |||||||||||| |||| |||| |||| ||||||||    
T  18431545 tcttcaggtttgagatagagatgtggtgtccatcttacttgtggggtttctctt 18431492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 364 - 507
Target Start/End: Original strand, 45528202 - 45528345
Alignment:
Q  364 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 463  Q
    |||||| |||| | ||||| ||| ||| || ||||||||| || |||| ||| |||||||||||| | | ||||||||||||||||  |||||||| |||    
T  45528202 taatgtatcatgtatgagttaaatttcaacgttggatgcacgagtatatattgagcaacatataaatgagatgacaaatatacctaatgtcttaagattt 45528301  T
Q  464 tggatgaagatgtggtgtcaatctcacttatgggatttctctta 507  Q
    ||| ||||||| ||||||  ||||||||| |||| |||||||||    
T  45528302 tgggtgaagatttggtgtgtatctcacttgtggggtttctctta 45528345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 364 - 522
Target Start/End: Complemental strand, 15276084 - 15275927
Alignment:
Q  364 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 463  Q
    ||||||| ||| ||||||| || ||| |||||| |||| |||| || | ||  |||||| ||||||| | ||| | ||||||||||  ||||||||||||    
T  15276084 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgtccaatatacctaatgtcttaaggttt 15275985  T
Q  464 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 522  Q
     | ||||||||||||||||||||||| || |||| |||||||||| |||||| ||||||    
T  15275984 cgaatgaagatgtggtgtcaatctcatttgtggg-tttctcttagacaaatgtaatgat 15275927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 364 - 522
Target Start/End: Complemental strand, 15456453 - 15456296
Alignment:
Q  364 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 463  Q
    ||||||| ||| ||||||| || ||| |||||| |||| |||| || | ||  |||||| ||||||| | ||| | ||||||||||  ||||||||||||    
T  15456453 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgtccaatatacctaatgtcttaaggttt 15456354  T
Q  464 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 522  Q
     | ||||||||||||||||||||||| || |||| |||||||||| |||||| ||||||    
T  15456353 cgaatgaagatgtggtgtcaatctcatttgtggg-tttctcttagacaaatgtaatgat 15456296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 490
Target Start/End: Original strand, 38291757 - 38291906
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 440  Q
    |||||||||||||||||| ||  | ||||| || ||| || | ||| ||| ||||| ||||||||| |  | ||| || ||||||||||| |||| |  |    
T  38291757 tctcacacttaagggagatatattgatgtggcaattgcgacttaaagttccacatttgatgcaagagtggacattgagaaacatataagtgaaattatca 38291856  T
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcac 490  Q
    |||||||||  ||||||||||||||||||||||||| |||||||||||||    
T  38291857 atatacctaatgtcttaaggttttggatgaagatgtcgtgtcaatctcac 38291906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 355 - 492
Target Start/End: Complemental strand, 15276900 - 15276763
Alignment:
Q  355 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 454  Q
    |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||| || |||||  | || | ||||| ||||||| ||  ||     
T  15276900 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 15276801  T
Q  455 ttaaggttttggatgaagatgtggtgtcaatctcactt 492  Q
    |||||||||| | |||||||||||||||||||||||||    
T  15276800 ttaaggttttaggtgaagatgtggtgtcaatctcactt 15276763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 355 - 492
Target Start/End: Complemental strand, 15457269 - 15457132
Alignment:
Q  355 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 454  Q
    |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||| || |||||  | || | ||||| ||||||| ||  ||     
T  15457269 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 15457170  T
Q  455 ttaaggttttggatgaagatgtggtgtcaatctcactt 492  Q
    |||||||||| | |||||||||||||||||||||||||    
T  15457169 ttaaggttttaggtgaagatgtggtgtcaatctcactt 15457132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 333 - 485
Target Start/End: Original strand, 760653 - 760805
Alignment:
Q  333 gcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagtta 432  Q
    ||||||| ||||||| ||||| ||||||||  |||| ||||| | ||||| |||| |||||||| ||||||||| ||||  || | |||||||| ||| |    
T  760653 gcagagagtctcacaattaagcgagagatgtgaatgcgtcatgtatgagttaaacatctacatttgatgcaagaatatactttaaacaacatatcagtga 760752  T
Q  433 aatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaat 485  Q
    | |||| ||||||||||  ||||||   ||||| ||||| |||||||||||||    
T  760753 agtgactaatatacctaatgtcttactattttgaatgaatatgtggtgtcaat 760805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 322 - 398
Target Start/End: Original strand, 5685854 - 5685930
Alignment:
Q  322 atatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattgg 398  Q
    ||||||| |||  |||||||||||||||||| ||||||||| ||||||||||| ||||||| | | |||||||||||    
T  5685854 atatcatagacatagagaatctcacacttaaaggagagatgttaatgtgtcatgtgtgagttataattctacattgg 5685930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 19263374 - 19263301
Alignment:
Q  419 caacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 492  Q
    ||||| |||||| | |||||  |||||||||  |||||||||||| ||||| ||||||||||||||||||||||    
T  19263374 caacaaataagtgatatgactcatatacctaatgtcttaaggtttaggatggagatgtggtgtcaatctcactt 19263301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 441 - 510
Target Start/End: Complemental strand, 23140604 - 23140535
Alignment:
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagcc 510  Q
    |||||||||  ||||||||||||||| | || ||||||||||||| ||| |||||||| |||||||||||    
T  23140604 atatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatttcatttatgggaattctcttagcc 23140535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 462 - 515
Target Start/End: Original strand, 38291332 - 38291385
Alignment:
Q  462 tttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 515  Q
    |||||||| ||||||||||||||||| | |||||||||||||||||| ||||||    
T  38291332 tttggatgcagatgtggtgtcaatcttatttatgggatttctcttagtcaaatg 38291385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 404
Target Start/End: Original strand, 45247753 - 45247835
Alignment:
Q  322 atatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaa 404  Q
    ||||||| | |||||||| |||||||||||||||||||||  |||| |||||  ||||||| ||| |||||| ||| ||||||    
T  45247753 atatcatagccgcagagagtctcacacttaagggagagattttaatatgtcaagtgtgagttaaagttctacgttgaatgcaa 45247835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 14715279 - 14715336
Alignment:
Q  349 ttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaaga 406  Q
    ||||| |||||||| |||||| |||| ||||||| ||||||||||||| |||||||||    
T  14715279 ttaagagagagatgttaatgtttcatgtgtgagttaaacttctacatttgatgcaaga 14715336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 345 - 490
Target Start/End: Complemental strand, 23141733 - 23141588
Alignment:
Q  345 acacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatat 444  Q
    |||||||||||| ||| | ||||||||||| ||| | | |||||| ||||||  ||| |||| || | ||| ||||||||| |||| | ||||| |||||    
T  23141733 acacttaagggaaagacgttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatacaagtgagatgactaatat 23141634  T
Q  445 acctagagtcttaaggttttggatgaagatgtggtgtcaatctcac 490  Q
    | | |  |||||||||||||| ||  ||||||||||| ||| ||||    
T  23141633 atccaatgtcttaaggttttgaatttagatgtggtgtgaatttcac 23141588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 510
Target Start/End: Original strand, 13758981 - 13759049
Alignment:
Q  442 tatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagcc 510  Q
    ||||||||  ||||||||||||||| | || ||||||||||||||||| || ||||  |||||||||||    
T  13758981 tatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctcatttgtggggattctcttagcc 13759049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 38291216 - 38291271
Alignment:
Q  340 atctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacat 395  Q
    ||||||||||||||||||||||| |||||||  || ||||| | ||||||||||||    
T  38291216 atctcacacttaagggagagatgttaatgtgctatgtgtgatttaaacttctacat 38291271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 434 - 492
Target Start/End: Original strand, 20874610 - 20874668
Alignment:
Q  434 atgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 492  Q
    |||||| ||||| |||  || ||||||||||||||||| |||||| |||||||||||||    
T  20874610 atgacatatatatctaatgttttaaggttttggatgaaaatgtggcgtcaatctcactt 20874668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 515
Target Start/End: Original strand, 36990271 - 36990444
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 440  Q
    ||||||| |||||  |||||||  |||||||||   |||| | |||| |||||||| || |||||| || | ||| | |||||| ||||| | ||||| |    
T  36990271 tctcacatttaagctagagatgtaaatgtgtcacgcgtgaattaaacatctacattagacgcaagagtagacattaaacaacatgtaagtgagatgacca 36990370  T
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 515  Q
    |||||  ||  ||||||||||||||  |||| ||||||||||||| ||| || | || |||||||||| ||||||    
T  36990371 atatatgtaatgtcttaaggttttgagtgaatatgtggtgtcaatatcatttgttgg-tttctcttagtcaaatg 36990444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 522
Target Start/End: Complemental strand, 42797151 - 42797046
Alignment:
Q  417 agcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgc 516  Q
    |||||||||||||| | ||||| |||||  | |  |||||||||||||| ||  ||||||||||| ||| |||| | |||| ||| |||| | |||||||    
T  42797151 agcaacatataagtgagatgactaatatttccaatgtcttaaggttttgaatttagatgtggtgtgaatttcacgtgtggggtttttcttggtcaaatgc 42797052  T
Q  517 aatgat 522  Q
    ||||||    
T  42797051 aatgat 42797046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 392
Target Start/End: Original strand, 23686596 - 23686656
Alignment:
Q  332 cgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttcta 392  Q
    |||||||| | |||||||||||||||||||| |||| |||||  ||||||| ||| |||||    
T  23686596 cgcagagagtatcacacttaagggagagatgttaatatgtcaagtgtgagttaaagttcta 23686656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 373
Target Start/End: Original strand, 32916816 - 32916856
Alignment:
Q  333 gcagagaatctcacacttaagggagagatggtaatgtgtca 373  Q
    ||||||| ||||||| |||||||||||||| ||||||||||    
T  32916816 gcagagagtctcacatttaagggagagatgctaatgtgtca 32916856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 339 - 508
Target Start/End: Complemental strand, 31089639 - 31089469
Alignment:
Q  339 aatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgac 438  Q
    |||||||||||||||||||| ||| ||||||||||| ||| ||| ||| |||||||||||||| |||| ||||  || |||||||||||||  | ||||     
T  31089639 aatctcacacttaagggagatatgttaatgtgtcatatgtaagttaaatttctacattggatgaaagagtatattttgagcaacatataagcgagatgat 31089540  T
Q  439 aaatatacctagagtcttaag-gttttggatgaagatgtggtgtcaatctcacttatgggatttctcttag 508  Q
     ||||||||||  |||| |||  |||| | ||| ||||||||||||||||||||| || | ||||||||||    
T  31089539 caatatacctaatgtctgaagtttttttggtgaggatgtggtgtcaatctcacttgtgaggtttctcttag 31089469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 230 - 506
Target Start/End: Original strand, 16852766 - 16853042
Alignment:
Q  230 aaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttgttcctcttatattatttttccttctcaccatatcatg 329  Q
    ||||||||||||||| ||||  || ||| ||||   ||||||| ||||||||||| ||||||||  |||| || ||||||  |  |||||||||||||      
T  16852766 aaagaaagaaacaaaaacacttctatataaaatcaacaccaacccacattttttaacatgttgtgtctctgatcttatttggctctctcaccatatcaga 16852865  T
Q  330 gacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataag 429  Q
     |  | ||   |||||||  |||  |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||| || |||||  | |    
T  16852866 aatacggattgtctcacaagtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatg 16852965  T
Q  430 ttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 506  Q
    | | ||||| ||||||| ||  || ||||||||||    |||||||||||||||||||||| | | |||||||||||    
T  16852966 tgagatgactaatatacataatgtattaaggttttaagggaagatgtggtgtcaatctcacatgtcggatttctctt 16853042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 339 - 508
Target Start/End: Original strand, 27342183 - 27342355
Alignment:
Q  339 aatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaat---tcagcaacatataagttaaat 435  Q
    ||||||||| |||||||||||||  | ||||  ||| ||||||| ||||||||||||||||||||| | |||| ||   |||| |||| ||| |  | ||    
T  27342183 aatctcacatttaagggagagatatttatgttccatgtgtgagttaaacttctacattggatgcaatagtatatattgatcagtaacaaatacgcgagat 27342282  T
Q  436 gacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttag 508  Q
     | ||||||||||| ||||||||| |||| |  ||||||||| | ||||| |||||| | || ||||||||||    
T  27342283 aaaaaatatacctaaagtcttaagattttaggcgaagatgtgatctcaatttcacttgtagggtttctcttag 27342355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 292
Target Start/End: Complemental strand, 22635762 - 22635700
Alignment:
Q  230 aaagaaagaaacaaagacacccctctatgaaatagccaccaactcacattttttaccatgttg 292  Q
    |||||||| ||||||||||||| | ||| |||  ||||| |||||||||||||||||||||||    
T  22635762 aaagaaaggaacaaagacacccttgtataaaaccgccacaaactcacattttttaccatgttg 22635700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 482
Target Start/End: Original strand, 11976911 - 11976959
Alignment:
Q  434 atgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtc 482  Q
    |||||| |||||| ||| |||||||||||||||||||||||||| ||||    
T  11976911 atgacacatatacatagtgtcttaaggttttggatgaagatgtgttgtc 11976959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 492
Target Start/End: Complemental strand, 43387179 - 43387042
Alignment:
Q  355 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 454  Q
    |||||||| ||||||||||  ||||||| ||| ||  |||||| |||||| | || |  || || ||||||||||| |||||||   |||| |||  |||    
T  43387179 gagagatgttaatgtgtcaagtgtgagttaaaattacacattgaatgcaatagtagatgttgagaaacatataagtgaaatgactcgtatatctaatgtc 43387080  T
Q  455 ttaaggttttggatgaagatgtggtgtcaatctcactt 492  Q
    ||||| |||||| ||||| |||| ||||||||| ||||    
T  43387079 ttaagattttgggtgaagttgtgatgtcaatcttactt 43387042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 355 - 506
Target Start/End: Complemental strand, 12125580 - 12125429
Alignment:
Q  355 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 454  Q
    |||||||| |||||||||||| |||||| | |||||||| || ||||||||| |||| ||| ||||||||||| || | ||||| ||||||||||  |||    
T  12125580 gagagatgttaatgtgtcattagtgagttacacttctacttttgatgcaagagtatatattgagcaacatatatgtgagatgaccaatatacctaatgtc 12125481  T
Q  455 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 506  Q
    || | ||||  |||  |||||||||||| |||| |||| |||| ||||||||    
T  12125480 ttcatgtttgagatagagatgtggtgtctatcttacttgtggggtttctctt 12125429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 376 - 522
Target Start/End: Original strand, 9265297 - 9265443
Alignment:
Q  376 tgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatg 475  Q
    ||||||| || ||| |||||| ||||||||| || | ||| |||||||||||||| | ||| | ||||||| ||  |||||||||||||| |||||  ||    
T  9265297 tgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttaaggttttgaatgaaactg 9265396  T
Q  476 tggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 522  Q
    | |||||||||||| |||| || |||||||||| |||||| ||||||    
T  9265397 tagtgtcaatctcatttatagggtttctcttagacaaatgtaatgat 9265443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 364 - 522
Target Start/End: Original strand, 9266725 - 9266882
Alignment:
Q  364 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 463  Q
    ||||||| ||| ||||||| || ||| |||||| |||| |||| || | ||| |||||| ||||||| | ||| | ||||||||||  ||||||||||||    
T  9266725 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatattgagcaacgtataagtaagatgtccaatatacctaatgtcttaaggttt 9266824  T
Q  464 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 522  Q
    || ||||| ||||||||||||||||| ||  ||| |||||||||| ||||| |||||||    
T  9266825 tgaatgaaaatgtggtgtcaatctcatttgcggg-tttctcttagacaaatacaatgat 9266882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 341 - 492
Target Start/End: Complemental strand, 20934335 - 20934184
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 440  Q
    |||||||| ||||||||||||| | |||| |||| ||||| | |||||||||||||| |||||| | |||| ||| |||||||||||||  | | ||  |    
T  20934335 tctcacacataagggagagatgtttatgtttcatgtgtgacttaaacttctacattgtatgcaataatatatattgagcaacatataagcgagaagaaca 20934236  T
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 492  Q
    |||||||||  | |||||| ||||   |||| ||||||||||||||||||||    
T  20934235 atatacctaatgccttaagattttacgtgaatatgtggtgtcaatctcactt 20934184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 507
Target Start/End: Complemental strand, 6087313 - 6087136
Alignment:
Q  330 gacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataag 429  Q
    |||||| ||| ||||||| ||||||||| |||| | ||||||||| | | ||| |||||||||||||  |||||| | |||| |   |||||||||||||    
T  6087313 gacgcaaagactctcacatttaagggagcgatgttgatgtgtcatgtttaagttaaacttctacatttcatgcaatagtatataactagcaacatataag 6087214  T
Q  430 ttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 507  Q
    | | || |||| ||||||||   ||| |||||||| | |||| |||| |||| ||||||| || |||| |||||||||    
T  6087213 tgagattacaagtatacctaatatctcaaggttttaggtgaaaatgtagtgttaatctcaattgtggggtttctctta 6087136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 506
Target Start/End: Original strand, 6436831 - 6436996
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 440  Q
    |||||||| |||  |||| ||| ||||||||||| | | ||| |||||||||||||||| |||| | |||| ||| || |||||  | || | ||||| |    
T  6436831 tctcacacgtaacagagatatgttaatgtgtcatgtctaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgacta 6436930  T
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 506  Q
    |||||| ||  || ||||||| || | ||||||||||| ||||||||||||| | |||||||||||    
T  6436931 atatacataatgtattaaggtgttaggtgaagatgtggcgtcaatctcacttgtcggatttctctt 6436996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 364 - 506
Target Start/End: Original strand, 9262779 - 9262921
Alignment:
Q  364 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 463  Q
    ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||| || |||||  | || | ||||| ||||||| ||  || |||||||||    
T  9262779 taatgtgtcatgtgtaagttaaacttctacattggaagcaaaaatatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggttt 9262878  T
Q  464 tggatgaagatgtggtgtcaatctcacttatgggatttctctt 506  Q
    | | |||||||||| | |||||||||| | | |||||||||||    
T  9262879 taggtgaagatgtgctctcaatctcacatgtcggatttctctt 9262921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 419 - 492
Target Start/End: Original strand, 50419 - 50492
Alignment:
Q  419 caacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 492  Q
    ||||| |||||| | |||||  |||||||||  |||||||||||| ||||| ||||||||||||||||||||||    
T  50419 caacaaataagtgatatgactcatatacctaatgtcttaaggtttgggatggagatgtggtgtcaatctcactt 50492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 455 - 514
Target Start/End: Complemental strand, 14240556 - 14240497
Alignment:
Q  455 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaat 514  Q
    ||||| ||||| ||||||||||||||||||||||| || |||| |||||||||| |||||    
T  14240556 ttaagattttgaatgaagatgtggtgtcaatctcatttgtggggtttctcttagacaaat 14240497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 411
Target Start/End: Original strand, 431968 - 432031
Alignment:
Q  348 cttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactata 411  Q
    ||||| ||||||||  |||||||||| |||||||| ||| ||| ||||||||||||||| ||||    
T  431968 cttaatggagagatattaatgtgtcaattgtgagttaaaattcgacattggatgcaagagtata 432031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 404
Target Start/End: Complemental strand, 25225417 - 25225358
Alignment:
Q  345 acacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaa 404  Q
    ||||||||||||| |||| |||| |||||||||||||| ||| ||| |||||| ||||||    
T  25225417 acacttaagggagggatgttaatatgtcatttgtgagttaaagttccacattgaatgcaa 25225358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 405
Target Start/End: Original strand, 9263473 - 9263537
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaag 405  Q
    ||||||||||| |||||||||| ||| |||||| |||||| | ||| ||| | ||||||||||||    
T  9263473 tctcacacttatgggagagatgttaaagtgtcaattgtgactcaaagttccaaattggatgcaag 9263537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 380
Target Start/End: Complemental strand, 10973326 - 10973269
Alignment:
Q  321 catatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtga 380  Q
    |||||||| |||  ||||| |||||||||||||  ||||||| |||||||||||||||||    
T  10973326 catatcatagacatagagagtctcacacttaag--agagatgttaatgtgtcatttgtga 10973269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 392
Target Start/End: Original strand, 39187289 - 39187349
Alignment:
Q  332 cgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttcta 392  Q
    |||||||| |||||||||||||||||||||  |||| |||||  ||||||| ||| |||||    
T  39187289 cgcagagagtctcacacttaagggagagattttaatatgtcaagtgtgagttaaagttcta 39187349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 522
Target Start/End: Complemental strand, 32565 - 32384
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 440  Q
    |||| ||||| ||||| ||| | ||||||||||  ||||| | |||||||||||||  ||| |||| |||| ||| |||||||||||||| | |||||||    
T  32565 tctcgcacttgagggaaagacgttaatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatgacaa 32466  T
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 522  Q
    ||||||  | |||||||||||||||  |  ||||||| ||| ||| | || |||||  |||||||| | |||||||||||||    
T  32465 atatactcaaagtcttaaggttttgagtttagatgtgatgtgaattttacgtatggagtttctcttggtcaaatgcaatgat 32384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 523 - 596
Target Start/End: Complemental strand, 24360925 - 24360852
Alignment:
Q  523 aagtcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcctatgct 596  Q
    |||||||||||||||||||  |||||||||||||||||||||| |||||||||| |||| ||||||||| ||||    
T  24360925 aagtcattacaggctcccttagagctccaatcattatgataaactgttgtcttaattttcggttgtcctttgct 24360852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 355 - 497
Target Start/End: Complemental strand, 11554470 - 11554328
Alignment:
Q  355 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 454  Q
    |||||||| ||||||||||| ||||||| || ||||||||||||||||| || ||    || | |||||||| ||| | |||||  || ||||||  |||    
T  11554470 gagagatgttaatgtgtcatgtgtgagttaaccttctacattggatgcaggagtagttgttaaacaacatattagtgagatgacccatgtacctaatgtc 11554371  T
Q  455 ttaaggttttggatgaagatgtggtgtcaatctcacttatggg 497  Q
    |||||||||||| | || ||||||||||||||||| |||||||    
T  11554370 ttaaggttttgggtcaaaatgtggtgtcaatctcatttatggg 11554328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 355 - 497
Target Start/End: Original strand, 4852808 - 4852950
Alignment:
Q  355 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 454  Q
    |||||||| ||||||||||| ||||||| || ||||||||||||||||| || ||    || | |||||||| ||| | |||||  || |||| |  |||    
T  4852808 gagagatgttaatgtgtcatgtgtgagttaaccttctacattggatgcaggagtagttgttaaacaacatattagtgagatgacccatgtaccgaatgtc 4852907  T
Q  455 ttaaggttttggatgaagatgtggtgtcaatctcacttatggg 497  Q
    ||||| |||||||| || ||||||||||||||||| |||||||    
T  4852908 ttaagattttggatcaaaatgtggtgtcaatctcatttatggg 4852950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 419 - 489
Target Start/End: Original strand, 2970421 - 2970491
Alignment:
Q  419 caacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctca 489  Q
    |||||||||||| |||||||| ||||||||   |||||||  |||||||| ||||||||||||||||||||    
T  2970421 caacatataagtgaaatgacacatatacctcatgtcttaaaattttggataaagatgtggtgtcaatctca 2970491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 414 - 490
Target Start/End: Complemental strand, 18090013 - 18089937
Alignment:
Q  414 ttcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcac 490  Q
    ||||| ||||||||| | | ||||  ||||||||||  | ||||||||||||| |||||||||||||||||||||||    
T  18090013 ttcagaaacatataattgagatgaacaatatacctaatgccttaaggttttgggtgaagatgtggtgtcaatctcac 18089937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 506
Target Start/End: Complemental strand, 26596824 - 26596659
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 440  Q
    ||||||| || ||||||||||| | |||| |||| ||||| | ||||||||||||||| ||||| |  ||| ||| || ||||  ||||  | |||| ||    
T  26596824 tctcacatttcagggagagatgtttatgtatcatgtgtgacttaaacttctacattggctgcaatagaatatattgagtaacaattaagcgagatgaaaa 26596725  T
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 506  Q
    |||||||||  ||||||||  ||| |  ||||||||| | ||||| |||||| | |||||||||||    
T  26596724 atatacctaatgtcttaagagtttaggcgaagatgtgatctcaatttcacttgtaggatttctctt 26596659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 515
Target Start/End: Complemental strand, 34515220 - 34515068
Alignment:
Q  364 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtctta-aggtt 462  Q
    ||||||||||| ||| ||| |||||||||||||| | |||| | |||| ||| || |||||  | || | ||||| ||||||| ||  |||||  |||||    
T  34515220 taatgtgtcatgtgtcagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatgaccaatatacataatgtctttcaggtt 34515121  T
Q  463 ttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 515  Q
    |||  |||||||||| ||||||||||| || |||| |||||||| | ||||||    
T  34515120 ttgagtgaagatgtgatgtcaatctcatttttggggtttctcttggtcaaatg 34515068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 487
Target Start/End: Original strand, 24397910 - 24398047
Alignment:
Q  349 ttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacct 448  Q
    ||||| |||||||  ||||||||||| ||||||| || |||||||||| || | |  | |||| ||| |||||||||||| | | ||||| |||||| ||    
T  24397910 ttaagagagagatattaatgtgtcatgtgtgagttaa-cttctacattagacgaattagtatatattgagcaacatataaatgagatgactaatatatct 24398008  T
Q  449 agagtcttaaggttttggatgaagatgtggtgtcaatct 487  Q
    |  ||| |||| |||||| |||||| ||| |||||||||    
T  24398009 aatgtcgtaagattttgggtgaagaggtgatgtcaatct 24398047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 486
Target Start/End: Complemental strand, 26595962 - 26595896
Alignment:
Q  420 aacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatc 486  Q
    ||||||||||| | ||||| |||  |||||  ||||||||||||||||||| |||||| ||||||||    
T  26595962 aacatataagtaagatgaccaatgcacctaatgtcttaaggttttggatgatgatgtgatgtcaatc 26595896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 490
Target Start/End: Original strand, 1599831 - 1599976
Alignment:
Q  345 acacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatat 444  Q
    |||||| ||||| ||| | ||||||||||| ||| | | |||||| ||||||  ||| |||| || | ||| |||||||||||| | | ||||| |||||    
T  1599831 acacttgagggaaagacgttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatataaatgagatgactaatat 1599930  T
Q  445 acctagagtcttaaggttttggatgaagatgtggtgtcaatctcac 490  Q
    | | |  |||||||||||||| ||  ||||||||||| ||| ||||    
T  1599931 atccaatgtcttaaggttttgaatttagatgtggtgtgaatttcac 1599976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 419 - 523
Target Start/End: Complemental strand, 29214299 - 29214195
Alignment:
Q  419 caacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaa 518  Q
    ||||||| |||| | |||||  |||||||||  ||||||||  |||||||||||||||| |   ||||||||||||| | || ||||||||  |||| ||    
T  29214299 caacatacaagtgagatgactcatatacctattgtcttaagactttggatgaagatgtgataataatctcacttatgtggttgctcttagcgtaatgtaa 29214200  T
Q  519 tgata 523  Q
    |||||    
T  29214199 tgata 29214195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 507
Target Start/End: Complemental strand, 17474751 - 17474599
Alignment:
Q  355 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 454  Q
    |||||||  ||||| ||| | ||||||| |||||||||| || ||||||||| |||| ||| | ||||||||  || | ||| ||||||||||||   ||    
T  17474751 gagagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggcaaatatacctaatatc 17474652  T
Q  455 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 507  Q
    || |||||| ||||| |||||||||||| |||| |||| |||| |||||||||    
T  17474651 ttcaggtttcggatggagatgtggtgtccatcttacttgtggggtttctctta 17474599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 355 - 507
Target Start/End: Original strand, 17578463 - 17578615
Alignment:
Q  355 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 454  Q
    |||||||  ||||| ||| | ||||||| |||||||||| || ||||||||| |||| ||| | ||||||||  || | ||| ||||||||||||   ||    
T  17578463 gagagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggcaaatatacctaatatc 17578562  T
Q  455 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 507  Q
    || |||||| ||||| |||||||||||| |||| |||| |||| |||||||||    
T  17578563 ttcaggtttcggatggagatgtggtgtccatcttacttgtggggtttctctta 17578615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 514
Target Start/End: Original strand, 6202346 - 6202483
Alignment:
Q  377 gtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgt 476  Q
    |||||| || ||| |||||| ||||||||| || | ||| |||||||||||||| | ||| | ||||||| ||  |||||||| ||||| ||||| |||     
T  6202346 gtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttaagattttgaatgaaaatgc 6202445  T
Q  477 ggtgtcaatctcacttatgggatttctcttagccaaat 514  Q
     |||||||||||| |||| || |||||||||| |||||    
T  6202446 agtgtcaatctcatttatagggtttctcttagacaaat 6202483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 507
Target Start/End: Complemental strand, 17510235 - 17510083
Alignment:
Q  355 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 454  Q
    |||||||  ||||| ||| | ||||||| |||||||||| || ||||||||| |||| ||| | ||||||||  || | ||| | ||||||||||   ||    
T  17510235 gagagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggccaatatacctaatatc 17510136  T
Q  455 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 507  Q
    || |||||| ||||| |||||||||||| |||| |||| |||| |||||||||    
T  17510135 ttcaggtttcggatggagatgtggtgtccatcttacttgtggggtttctctta 17510083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 355 - 507
Target Start/End: Original strand, 17542979 - 17543131
Alignment:
Q  355 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 454  Q
    |||||||  ||||| ||| | ||||||| |||||||||| || ||||||||| |||| ||| | ||||||||  || | ||| | ||||||||||   ||    
T  17542979 gagagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggccaatatacctaatatc 17543078  T
Q  455 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 507  Q
    || |||||| ||||| |||||||||||| |||| |||| |||| |||||||||    
T  17543079 ttcaggtttcggatggagatgtggtgtccatcttacttgtggggtttctctta 17543131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 317 - 430
Target Start/End: Complemental strand, 42079082 - 42078967
Alignment:
Q  317 tcaccatatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttc--tacattggatgcaagactataaat 414  Q
    |||||||||||| ||  || | ||||||||| |||||| ||||||| ||||||||||| ||||||| |||||||  |||||| ||||||||| || | ||    
T  42079082 tcaccatatcatagattcaaacaatctcacagttaaggaagagatgttaatgtgtcatgtgtgagttaaacttctatacatttgatgcaagagtagatat 42078983  T
Q  415 tcagcaacatataagt 430  Q
    | |||||||| |||||    
T  42078982 tgagcaacatgtaagt 42078967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 364 - 513
Target Start/End: Complemental strand, 38788213 - 38788064
Alignment:
Q  364 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 463  Q
    ||||||| ||| ||||||| || ||| |||||| || |||| | || | ||| |||||||||||| | | ||| | |||||||||   |||||||  |||    
T  38788213 taatgtgacatgtgtgagttaaccttttacatttgacgcaaaagtaaatattgagcaacatataactgagatgtccaatatacctgatgtcttaaaattt 38788114  T
Q  464 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaa 513  Q
    || ||||||||||||||||||||||| || |||  |||||||||| ||||    
T  38788113 tgaatgaagatgtggtgtcaatctcatttgtggagtttctcttagacaaa 38788064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 321 - 382
Target Start/End: Complemental strand, 15464457 - 15464396
Alignment:
Q  321 catatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagt 382  Q
    |||||||| |||  ||||| |||||||||||||| ||||||| ||||||||||| |||||||    
T  15464457 catatcatagacatagagagtctcacacttaaggtagagatgctaatgtgtcatgtgtgagt 15464396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 453 - 522
Target Start/End: Complemental strand, 48553312 - 48553243
Alignment:
Q  453 tcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 522  Q
    |||||||||||| ||||||||| || ||  |||||||||| ||||||||||| || |||||||| |||||    
T  48553312 tcttaaggtttttgatgaagatatgttgataatctcacttgtgggatttctcgtaaccaaatgcgatgat 48553243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 510
Target Start/End: Original strand, 24708450 - 24708597
Alignment:
Q  363 gtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggtt 462  Q
    ||||||||||| || ||||| ||| || ||||||| ||| |||| ||||  || |||||||||||||| |||| || ||||||||||     |||||  |    
T  24708450 gtaatgtgtcaattatgagttaaaattatacattgtatgtaagagtatatgttgagcaacatataagtaaaataaccaatatacctaatactttaagact 24708549  T
Q  463 ttggatgaagatgtggtgtcaatctcacttatgggatttctcttagcc 510  Q
    || |||||||||||| | | || ||||||| || | ||||||||||||    
T  24708550 tttgatgaagatgtgatttgaaactcacttgtgtggtttctcttagcc 24708597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 484
Target Start/End: Original strand, 27938832 - 27938875
Alignment:
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaa 484  Q
    ||||||||| || |||||||||||||||| ||||||||||||||    
T  27938832 atatacctaaagccttaaggttttggatgtagatgtggtgtcaa 27938875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 418
Target Start/End: Original strand, 6188756 - 6188833
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcag 418  Q
    |||||||| |||  |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||||||    
T  6188756 tctcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattcag 6188833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 418
Target Start/End: Original strand, 6195272 - 6195349
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcag 418  Q
    |||||||| |||  |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||||||    
T  6195272 tctcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattcag 6195349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 412 - 507
Target Start/End: Complemental strand, 45678 - 45583
Alignment:
Q  412 aattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 507  Q
    |||| |||||||||||| | | ||||||||||||||||  |||||||| |||||| ||||||| ||||||  ||||||||| |||| |||||||||    
T  45678 aattaagcaacatataaatgagatgacaaatatacctaatgtcttaagattttgggtgaagatttggtgtttatctcacttgtggggtttctctta 45583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 412 - 507
Target Start/End: Original strand, 153109 - 153204
Alignment:
Q  412 aattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 507  Q
    |||| |||||||||||| | | ||||||||||||||||  |||||||| |||||| ||||||| ||||||  ||||||||| |||| |||||||||    
T  153109 aattaagcaacatataaatgagatgacaaatatacctaatgtcttaagattttgggtgaagatttggtgtttatctcacttgtggggtttctctta 153204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 417 - 522
Target Start/End: Original strand, 12247 - 12352
Alignment:
Q  417 agcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgc 516  Q
    |||||||||||||| | ||| | |||||||||   |||||||| ||||| |||||||||||||| |||||||| |  |||| |||||||||| ||||||     
T  12247 agcaacatataagtgagatgtccaatatacctgatgtcttaagattttgaatgaagatgtggtggcaatctcattcgtggggtttctcttagacaaatgt 12346  T
Q  517 aatgat 522  Q
    ||||||    
T  12347 aatgat 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 417 - 513
Target Start/End: Complemental strand, 10657 - 10561
Alignment:
Q  417 agcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaa 513  Q
    |||||||||||||| | ||||| || ||||| |  ||| |||| |||||||||||||||| ||||||||||||||| | || |||||||||| ||||    
T  10657 agcaacatataagtgagatgacgaacataccaaatgtcctaagtttttggatgaagatgtagtgtcaatctcacttgtagggtttctcttagacaaa 10561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1312 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 366 - 492
Target Start/End: Original strand, 2 - 128
Alignment:
Q  366 atgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttg 465  Q
    |||| |||| ||||||| |||||||||||||| |||||| | |||| ||| |||||||||||||  | | ||  ||||||||||  | |||||| ||||     
T  2 atgtttcatgtgtgagttaaacttctacattgtatgcaatagtatatattgagcaacatataagcgagaagaacaatatacctaatgccttaagatttta 101  T
Q  466 gatgaagatgtggtgtcaatctcactt 492  Q
      | |||||||||||||||||||||||    
T  102 cgtaaagatgtggtgtcaatctcactt 128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 317 - 395
Target Start/End: Original strand, 15301534 - 15301611
Alignment:
Q  317 tcaccatatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacat 395  Q
    |||||||||||| ||  || ||||||||| |||||||||||||||| ||| ||||||| ||||||| ||||||||||||    
T  15301534 tcaccatatcatagatacaaagaatctca-acttaagggagagatgttaacgtgtcatatgtgagttaaacttctacat 15301611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 454 - 492
Target Start/End: Original strand, 9048715 - 9048753
Alignment:
Q  454 cttaaggttttggatgaagatgtggtgtcaatctcactt 492  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  9048715 cttaagattttggatgaagatgtggtgtcaatctcactt 9048753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 492
Target Start/End: Original strand, 24541767 - 24541918
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 440  Q
    |||| |||||||| || ||||| | || |||||| ||||||| |||||| ||  |||||||||||| | || | | || || ||||| || | || || |    
T  24541767 tctcccacttaagagaaagatgttgatatgtcatgtgtgagttaaacttttatgttggatgcaagagtgtatactgagaaaaatatacgtgagataacca 24541866  T
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 492  Q
    |||||||||  || |||||||||||||||||||| || ||| ||| ||||||    
T  24541867 atatacctactgtgttaaggttttggatgaagatatgatgttaatatcactt 24541918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 492
Target Start/End: Complemental strand, 38016026 - 38015875
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 440  Q
    ||||| |||| | ||||||||| ||||||||||  ||||||| ||| |   |||||| |||||| | || |  || |||||||||||||| | |||||      
T  38016026 tctcatacttgatggagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtgagatgactc 38015927  T
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 492  Q
    ||||| |||  | |||||| |||||| ||||| |||| ||||||||||||||    
T  38015926 atatatctaatgacttaagattttgggtgaagttgtgatgtcaatctcactt 38015875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 481
Target Start/End: Complemental strand, 38012936 - 38012839
Alignment:
Q  384 aaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgt 481  Q
    |||||||||||||| ||| |||| || | ||| |||||||||||| | ||||||| |||||||| |  || ||| ||||||| ||  |||||||||||    
T  38012936 aaacttctacattgtatgtaagagtagatattgagcaacatataactgaaatgactaatatacccaatgttttatggttttgaatttagatgtggtgt 38012839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 430
Target Start/End: Complemental strand, 12652 - 12561
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttc--tacattggatgcaagactataaattcagcaacatataagt 430  Q
    |||||||||||||| ||||||| ||||||||||| ||||||| ||| |||  |||||| ||||||||| || | ||| |||||||| |||||    
T  12652 tctcacacttaaggaagagatgttaatgtgtcatgtgtgagttaaatttctatacattagatgcaagagtaaatattgagcaacatgtaagt 12561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 487
Target Start/End: Original strand, 30831 - 30970
Alignment:
Q  347 acttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatac 446  Q
    ||||||| |||||||  ||||||||||| ||||||| || |||||||||| | ||| | | |||| ||| |||||||||||| | | ||||| ||||||     
T  30831 acttaagagagagatattaatgtgtcatgtgtgagttaa-cttctacattaggtgcgatagtatatattgagcaacatataaatgagatgactaatatat 30929  T
Q  447 ctagagtcttaaggttttggatgaagatgtggtgtcaatct 487  Q
    |||  ||| |||| |||||| |||||| ||| |||||||||    
T  30930 ctaatgtcataagattttgggtgaagaggtgatgtcaatct 30970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 515
Target Start/End: Complemental strand, 46321 - 46261
Alignment:
Q  455 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 515  Q
    |||||||||| ||||| || ||||||||||| |||||||||| ||||||||||| ||||||    
T  46321 ttaaggttttagatgatgaggtggtgtcaatatcacttatggcatttctcttagtcaaatg 46261  T

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Target: scaffold0380 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 515
Target Start/End: Original strand, 15251 - 15425
Alignment:
Q  341 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 440  Q
    |||||||||| ||||||| | | ||||||||||  ||||| | |||||| ||||||  ||| | || || | ||| |||||||||||||| |  |||  |    
T  15251 tctcacacttgagggagaaacgttaatgtgtcaagtgtgatttaaacttttacattatatgtatgagtagatattgagcaacatataagtgagctgatta 15350  T
Q  441 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 515  Q
    |||||| ||  ||||||| ||||||| |  ||||||||||| ||| |||| | |||| |||||||||| ||||||    
T  15351 atatacttaatgtcttaaagttttgggtttagatgtggtgtgaatttcacatgtggggtttctcttagtcaaatg 15425  T

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Target: scaffold0284 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 489
Target Start/End: Complemental strand, 7637 - 7539
Alignment:
Q  391 tacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctca 489  Q
    ||||||||||| |||| || |  || |||||||||||||||| ||||| || |||||||  ||||||||||||    ||||| ||||||||||||||||    
T  7637 tacattggatggaagagtagattttgagcaacatataagttagatgaccaaaatacctaatgtcttaaggtttcatgtgaagttgtggtgtcaatctca 7539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 449
Target Start/End: Complemental strand, 6540 - 6413
Alignment:
Q  322 atatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaa 421  Q
    |||||| || |||| ||| ||||||| ||||||||||| || |||||| |||  ||||||| ||| ||| | ||||||||||| | || |  || | |||    
T  6540 atatcagggtcgcaaagattctcacaattaagggagaggtgttaatgtatcaaatgtgagttaaagttccatattggatgcaaaaatagatgttgaacaa 6441  T
Q  422 catataagttaaatgacaaatataccta 449  Q
    ||||||||| | ||||| ||||||||||    
T  6440 catataagtgagatgaccaatataccta 6413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 419 - 492
Target Start/End: Complemental strand, 258 - 185
Alignment:
Q  419 caacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 492  Q
    ||||| |||||| | |||||  ||||| |||  |||||||||||| ||||| ||||||||||||||||||||||    
T  258 caacaaataagtgatatgactcatatatctaatgtcttaaggtttaggatggagatgtggtgtcaatctcactt 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 96008 - 95951
Alignment:
Q  349 ttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaaga 406  Q
    ||||| |||||||| |||||| |||| ||||||| ||||||||||||| |||||||||    
T  96008 ttaagagagagatgttaatgtttcatgtgtgagttaaacttctacatttgatgcaaga 95951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 380
Target Start/End: Original strand, 17307 - 17354
Alignment:
Q  333 gcagagaatctcacacttaagggagagatggtaatgtgtcatttgtga 380  Q
    ||||||||||||||||||||| | |||||| ||||||||||| |||||    
T  17307 gcagagaatctcacacttaagagtgagatgttaatgtgtcatatgtga 17354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1804 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1804
Description:

Target: scaffold1804; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 478
Target Start/End: Original strand, 1034 - 1072
Alignment:
Q  440 aatatacctagagtcttaaggttttggatgaagatgtgg 478  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  1034 aatatacctattgtcttaaggttttggatgaagatgtgg 1072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 507
Target Start/End: Complemental strand, 16054 - 16017
Alignment:
Q  470 aagatgtggtgtcaatctcacttatgggatttctctta 507  Q
    ||||||||||||||||||||||| || |||||||||||    
T  16054 aagatgtggtgtcaatctcacttgtgtgatttctctta 16017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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