View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1463_low_2 (Length: 418)
Name: NF1463_low_2
Description: NF1463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1463_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 16 - 415
Target Start/End: Original strand, 42331326 - 42331728
Alignment:
| Q |
16 |
aattgagtgtaaattttgatgacaatacatgatatcataaaagtgtgggtgccttagtacctaaagaaattgtgctgtgagattttacccaaattctatg |
115 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42331326 |
aattgggtgtaaattttgatgacaatacatgatatcataaaagtgtgggtgccttggtacctaaagaaattgtgctgtgagattttacccaaactctatg |
42331425 |
T |
|
| Q |
116 |
tttggtgatgtcgtttttgtggaagatatattgtgcaaaacataaaagtttgagttggaagatttctactagaagaggtctctttcaccaacggcacact |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42331426 |
tttggtgatgtcgtttttgtggaagatatattgtgcaaaacataaaagtttgagttggaagatttctactagaagaggtctctttcactaacggcacact |
42331525 |
T |
|
| Q |
216 |
gagagtataacaaatttggttgatgaaatctttttggtg---gatgatgcaaaacataaaaagtttgagnnnnnnnnnnnnnnnnctaataacgccagtt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
42331526 |
gagagtataacaaatttggttgatgaaatctttttggtggaagatgatgcaaaacataaaaagtttgagtttttctttttattttccaataacgccagtt |
42331625 |
T |
|
| Q |
313 |
taacactgttacattaaagggaggttagtgttatttgtgaaaatagagggggtgtaagtgacatattaatattaatatactaaaggaaggtgagtgcaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
42331626 |
taacactgttacattaaagggaggttagtgttatttgtgaaaatagagggggtgtaagtgacatattaatattaatatactaaagggaggtgagtacaat |
42331725 |
T |
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| Q |
413 |
tta |
415 |
Q |
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||| |
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| T |
42331726 |
tta |
42331728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 377
Target Start/End: Original strand, 41805527 - 41805888
Alignment:
| Q |
16 |
aattgagtgtaaattttgatgacaatacatgatatcataaaagtgtgggtgccttagtacctaaagaaattgtgctgtgagattttacccaaattctatg |
115 |
Q |
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||||| |||||||||||||| | | ||||| |||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41805527 |
aattgggtgtaaattttgataagagtacat---atcataaaagtg--ggtgccttagaacctaaagaaattgtgctgtcagattttacccaaattctatg |
41805621 |
T |
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| Q |
116 |
ttt-ggtgatgtcgtttttgtggaagatatattgtgcaaaacataaaagtttgagttggaagatttctactagaagaggtctctttcaccaac--ggcac |
212 |
Q |
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||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| ||| |||| |
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| T |
41805622 |
ttttggtgatgtcgtttttgtggaagttatacagtgcaaaacataaaagtttgagttggaagatttctaccaaaagaggtcactttcacaaacgaggcat |
41805721 |
T |
|
| Q |
213 |
actgagagtataacaaatttggttgatgaaatctttttggtggatga---tgcaaaacataaaaagtttgagnnnnnnnnnnnnnnnnctaataacgcca |
309 |
Q |
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|| ||||||| |||||||||| |||||||||||| ||||||||| || ||||||| || ||||||||||| |||||||||||| |
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| T |
41805722 |
acagagagtagaacaaatttgtttgatgaaatctgtttggtggaagatagtgcaaaatat-aaaagtttgagcttttctttttattttctaataacgcca |
41805820 |
T |
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| Q |
310 |
gtttaacactgttacattaaagggaggttagtgttatttgtgaaaatagagggggtgtaagtgacata |
377 |
Q |
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| T |
41805821 |
gcttaacactgttacattaaagggaggttagtgttattggtgaaaacagagggggtgtaagtgacata |
41805888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 376
Target Start/End: Complemental strand, 39599435 - 39599370
Alignment:
| Q |
311 |
tttaacactgttacattaaagggaggttagtgttatttgtgaaaatagagggggtgtaagtgacat |
376 |
Q |
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|||||||| |||| | | |||||||||||| |||||||||||||||| |||||||| ||||||||| |
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| T |
39599435 |
tttaacaccgttaaagtgaagggaggttagcgttatttgtgaaaataaagggggtgcaagtgacat |
39599370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 39599529 - 39599497
Alignment:
| Q |
224 |
aacaaatttggttgatgaaatctttttggtgga |
256 |
Q |
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| T |
39599529 |
aacaaattcggttgatgaaatctttttggtgga |
39599497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 745892 - 745840
Alignment:
| Q |
329 |
aagggaggttagtgttatttgtgaaaatagagggggtgtaagtgacatattaa |
381 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |
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| T |
745892 |
aagggaggttagtgttatttgttaaaatcgagggggtgtaagtgatatattaa |
745840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 373
Target Start/End: Original strand, 3262339 - 3262410
Alignment:
| Q |
302 |
taacgccagtttaacactgttacattaaagggaggttagtgttatttgtgaaaatagagggggtgtaagtga |
373 |
Q |
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|||||||| ||||||||||| | | | ||||| |||||| ||||||||| ||||| |||||| ||||||||| |
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| T |
3262339 |
taacgccactttaacactgtcatagtgaagggtggttagagttatttgttaaaattgaggggatgtaagtga |
3262410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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