View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1463_low_3 (Length: 408)
Name: NF1463_low_3
Description: NF1463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1463_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 64 - 391
Target Start/End: Original strand, 32165237 - 32165551
Alignment:
| Q |
64 |
gtagagaaaatgatacagtaataacaaagagaataatggtagagataatgtannnnnnnnnaaaaaggaagatataactgagaaatgaagaaacatgaga |
163 |
Q |
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| T |
32165237 |
gtagagaaaatgatacaataataacaaagagaataatggtagagataatgtattttttttaaaaa--gaagatataactgagaaatgaagaaacatgaga |
32165334 |
T |
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| Q |
164 |
aaaatgaagtgatatatatataaagtaaggtggaatttgtggcgatttaattcataagaaagtttataaccgtctaaatcgccaggaagtttggcgtcgt |
263 |
Q |
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| T |
32165335 |
aaaatgaagtgatata-----------agggggaatttgtggcgatttaattcataacaaagtttataattgtttaaatctccatgaagtttgttgtcgt |
32165423 |
T |
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| Q |
264 |
caaaacaaacataaattttaatttgagttctcgtcgtacattttgttgctgtcaaagtagccccaatttcaaatgtgactctaccatttattgtggcaaa |
363 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32165424 |
caaaacaaacataaattttaatttgagttctttttatacattttgttgctgtcaaagtagccacaatttcaaatgtgactctaccatttattgtggcaaa |
32165523 |
T |
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| Q |
364 |
gagaagccgtcacgaagttcgtgagagc |
391 |
Q |
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||||||||| || |||||||||||||| |
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| T |
32165524 |
aagaagccgttacaaagttcgtgagagc |
32165551 |
T |
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