View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1463_low_4 (Length: 393)
Name: NF1463_low_4
Description: NF1463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1463_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 374
Target Start/End: Original strand, 34759125 - 34759483
Alignment:
| Q |
13 |
aatataaaacatacctgggaacaacaactatggatctgcagctttagagtttctggattaatgcagagaagtttagtaacaaaaatcccaatttcttgca |
112 |
Q |
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| T |
34759125 |
aatataaaacatacctgggaactacaactatgcatctgcagctttagagtttctggattaatgcagagaagtttagtaacaaaaatcccaatttttttaa |
34759224 |
T |
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| Q |
113 |
gactcttctcgttatcatcatatagagcaatatcagcaaatgctacactatgtgcctctaacaaaattgtatctgacatatagccagaataacaaaattt |
212 |
Q |
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| T |
34759225 |
gactattctcgtgatcatcatataaagcaatatcagcaaatcctacactatgtgcctctaacaaaattgtatctgacatatagccagaataacaaaattt |
34759324 |
T |
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| Q |
213 |
tgcaaggcgcgaagcataaaacttaatttcagcatgcgacgtgtgatagaagcgagaatatcttattgaaacaacttcaagcagaggcacttgtaaattg |
312 |
Q |
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| T |
34759325 |
tgcagggcgcatagtataaaacttaatttcagcatgcaaagtgtgatagaagcgagaatatcttattgaaacaacttca---agaggcacttgtaaattg |
34759421 |
T |
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| Q |
313 |
acgctcttcacatgtgaaaaagtgcaatctaatgtctcataatgtgtaagagctgggaaatt |
374 |
Q |
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| T |
34759422 |
acactcttcacatgtgaaaaagtgcaatctaatgtctcataatgtctaagagctgggaaatt |
34759483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 54 - 374
Target Start/End: Original strand, 34751336 - 34751656
Alignment:
| Q |
54 |
ctttagagtttctggattaatgcagagaagtttagtaacaaaaatcccaatttcttgcagactcttctcgttatcatcatatagagcaatatcagcaaat |
153 |
Q |
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| T |
34751336 |
ctttagactttctggattaatactaagaagtttacaaacaaaaatcccaatttcttgcagactcttctcattatcatcatatagagcaatatcagcaaat |
34751435 |
T |
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| Q |
154 |
gctacactatgtgcctctaacaaaattgtatctgacatatagccagaataacaaaattttgcaaggcgcgaagcataaaacttaatttcagcatgcgacg |
253 |
Q |
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| T |
34751436 |
gctacactatgtgcctctaacaaaattgtatctgacatataaccagaataacagaattttgcaaggcgcgtagcataaaacttaatttcacaatgtgatt |
34751535 |
T |
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| Q |
254 |
tgtgatagaagcgagaatatcttattgaaacaacttcaagcagaggcacttgtaaattgacgctcttcacatgtgaaaaagtgcaatctaatgtctcata |
353 |
Q |
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| T |
34751536 |
tgtgatagaagggatcatagcttattgaaacaacttcaaggagaggcacttgtaaagtgacactcttcacattcagaaaagtgcaatctaatgtctcata |
34751635 |
T |
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| Q |
354 |
atgtgtaagagctgggaaatt |
374 |
Q |
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| T |
34751636 |
ctttctaagagctgggaaatt |
34751656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 51 - 374
Target Start/End: Original strand, 34746723 - 34747046
Alignment:
| Q |
51 |
cagctttagagtttctggattaatgcagagaagtttagtaacaaaaatcccaatttcttgcagactcttctcgttatcatcatatagagcaatatcagca |
150 |
Q |
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|||||||||| |||||||||||| | |||||||||| |||||||||||||||||||||| ||||||||| ||| | || ||||| || |||||||||| |
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| T |
34746723 |
cagctttagacattctggattaatactgagaagtttacaaacaaaaatcccaatttcttgcggactcttcttgttcttattatataaagtaatatcagca |
34746822 |
T |
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| Q |
151 |
aatgctacactatgtgcctctaacaaaattgtatctgacatatagccagaataacaaaattttgcaaggcgcgaagcataaaacttaatttcagcatgcg |
250 |
Q |
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| T |
34746823 |
gatgctacactatgtccctcaaacaaaattgtatctgacatatgaccataataacaaaatgttgcaatgcgcgaagcataaaacttaatttcagcatgcg |
34746922 |
T |
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| Q |
251 |
acgtgtgatagaagcgagaatatcttattgaaacaacttcaagcagaggcacttgtaaattgacgctcttcacatgtgaaaaagtgcaatctaatgtctc |
350 |
Q |
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| T |
34746923 |
acgtgcgatagaagggatgatagcttattgaaactacttcaagcagaggtacttgtaaaatgacactcttcacacctgacaaaatgcaaccaaatgtcac |
34747022 |
T |
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| Q |
351 |
ataatgtgtaagagctgggaaatt |
374 |
Q |
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| | | | ||||| |||||||||| |
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| T |
34747023 |
aaactttctaagaactgggaaatt |
34747046 |
T |
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