View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1463_low_5 (Length: 353)
Name: NF1463_low_5
Description: NF1463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1463_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 62 - 326
Target Start/End: Original strand, 36576717 - 36576981
Alignment:
| Q |
62 |
aacatttctaaagagcaattttagaccttacggtcgtgacatcgatggtggccgccccaccggacgattttcaaacggccgtattccaccagattgcatt |
161 |
Q |
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| T |
36576717 |
aacatttctaaagagcaattttagaccttacggtcgtgacatcgatggtggccgccccaccggacgattttcaaacggccgtattccaccagatttcatt |
36576816 |
T |
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| Q |
162 |
tctgaggcttttggtattaagagtcttataccagcatatttggatcctgcttatactattgatgattttgtcactggtgtttgctttgcctctgctggaa |
261 |
Q |
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| T |
36576817 |
tctgaggcttttggtattaagagtcttataccagcatatttggatcctgcttatactattgatgattttgtcactggtgtttgctttgcctctgctggaa |
36576916 |
T |
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| Q |
262 |
ctggatatgataatgcaacttctgctatactagtaagtgtttaattatggtccatgaaacattct |
326 |
Q |
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| T |
36576917 |
ctggatatgataatgcaacttctgctatactagtaagtgtttaattatggtctatgaaacattct |
36576981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 67 - 299
Target Start/End: Original strand, 36564093 - 36564325
Alignment:
| Q |
67 |
ttctaaagagcaattttagaccttacggtcgtgacatcgatggtggccgccccaccggacgattttcaaacggccgtattccaccagattgcatttctga |
166 |
Q |
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| T |
36564093 |
ttctcaagagcaattttaaaccttacggccgtgacttcgaaggtggccgccctaccggacggttttgtaacggtcgtactccaccggacttcatcgccga |
36564192 |
T |
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| Q |
167 |
ggcttttggtattaagagtcttataccagcatatttggatcctgcttatactattgatgattttgtcactggtgtttgctttgcctctgctggaactgga |
266 |
Q |
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| T |
36564193 |
agcttttggcgttaagcgcaatataccggcatacttggatcctgcttataccattgatgattttgtcactggtgtttgctttgcttctgctggaactgga |
36564292 |
T |
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| Q |
267 |
tatgataatgcaacttctgctatactagtaagt |
299 |
Q |
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| T |
36564293 |
tatgataatgcaacttctgatgtactagtaagt |
36564325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 26044571 - 26044623
Alignment:
| Q |
225 |
gattttgtcactggtgtttgctttgcctctgctggaactggatatgataatgc |
277 |
Q |
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| T |
26044571 |
gattttgctactggtgtttgttttgcttctgctggtactggatttgataatgc |
26044623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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