View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1463_low_8 (Length: 235)
Name: NF1463_low_8
Description: NF1463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1463_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 42331722 - 42331917
Alignment:
| Q |
5 |
caatttacccttgatactatcatgtttatatgtactaaagttgtttgtatattattcatttgcacttaagtaattgtatattcattattttttcaggttg |
104 |
Q |
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| T |
42331722 |
caatttatcctttatactatcatatttatatgtactaaagttgtttgtatattattcatttgcacttaagtaattgtatattcattattttttcaggttg |
42331821 |
T |
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| Q |
105 |
agagaaataaatttcaccatagatatgatgctaatatatgaaaaggtattcctgattcctcttataactattgttcagtcaaaattgatctttcac |
200 |
Q |
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| T |
42331822 |
agagaaataaatttcaccatagatatgatgctaatatatgaaaaggtattcttgattcctcttataactattgttcagtcaaaattgatctttcac |
42331917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 13151865 - 13151941
Alignment:
| Q |
92 |
ttttttcaggttgagagaaataaattt-caccatagatatgatgctaatatatgaaaaggtattcctgattcctctt |
167 |
Q |
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| T |
13151865 |
ttttttcaggttgaaagaaataatttttcactaaagatatgatgctagtatataaaaaggtatttttaattcctctt |
13151941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 13167972 - 13168033
Alignment:
| Q |
92 |
ttttttcaggttgagagaaataaattt-caccatagatatgatgctaatatatgaaaaggta |
152 |
Q |
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| T |
13167972 |
ttttttcaggttgaaagaaataatttttcactaaagatatgatgctagtatataaaaaggta |
13168033 |
T |
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