View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14640_high_11 (Length: 319)
Name: NF14640_high_11
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14640_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 30505833 - 30505681
Alignment:
| Q |
12 |
agttttacctgttttgtgccaacgggtttcgctaccatcctcgtgatgtgaatgtacttttcttctttttcttgttcctgttgtgtatgccttggatggt |
111 |
Q |
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| T |
30505833 |
agttttacctgttttgtgccaacgggtttcgcttccatcctcgtgatcggaatgtacctttcttctttttctagttcctgttgtgtatgccttggatggc |
30505734 |
T |
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| Q |
112 |
cgatgaaagaaatggcggatcaggccatctttgcttactcctgaagaaatata |
164 |
Q |
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| T |
30505733 |
cggtgaaagaaatggcggatcagtccatctttgcttactcctgaagaaatata |
30505681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 30513234 - 30512965
Alignment:
| Q |
12 |
agttttacctgttttgtgccaacgggtttcgctaccatcctcgtgatgtgaatgtacttttcttctttttcttgttcctgttgtgtatgcc-ttggatgg |
110 |
Q |
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| T |
30513234 |
agttttacctgttttgtgccaacagatttcgcttccatcctcgtgatctgaatgtacctttcttctttttcttgttcctgttgtgtatgcctttggatgg |
30513135 |
T |
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| Q |
111 |
tcgatgaaagaaatggcggatcaggccatctttgcttactcctgaagaaatatatataattcaatttagatgtacattcactactataggtgataatata |
210 |
Q |
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| T |
30513134 |
tcggtgaatgaaatgccggatcagtccatctttgcttactccggacgaa----atataattcaatgcagattttaattcactgctacatgtg-ta----a |
30513044 |
T |
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| Q |
211 |
tatagtgaaaatagcttgctatatagaatgttatctaaggaagaaccacatataaatagataaataagaagctaggtacca |
291 |
Q |
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| T |
30513043 |
tatagtgaaaatagctttctacatataatgttatctaaggaggaactgaatat--atagataaataagaagttaggtacca |
30512965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 34830090 - 34830163
Alignment:
| Q |
70 |
tttcttctttttcttgttcctgttgtgtatgccttggatggtcgatgaaagaaatggcggatcaggccatcttt |
143 |
Q |
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| T |
34830090 |
tttcttcttttccttgttcctgttgtgtatgctttagatggcctgtgaaagaagtgccggatctgtccatcttt |
34830163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 38886939 - 38886852
Alignment:
| Q |
67 |
acttttcttctttttcttgttcctgttgtgtatgccttggatggtcgatgaaagaaatggcggatcaggccatctttgcttactcctg |
154 |
Q |
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| T |
38886939 |
acttttcttctttttcttgttcctgttgtgtatgcttttgatggcctgtgaaagaaatgtcggatcagtccatctttgccgactcctg |
38886852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 4235647 - 4235563
Alignment:
| Q |
70 |
tttcttctttttcttgttcctgttgtgtatgccttggatggtcgatgaaagaaatggcggatcaggccatctttgcttactcctg |
154 |
Q |
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| T |
4235647 |
tttcttcttttccttgttcctgttgtgtatgcttttgaaggcctatgaaaaaagtggcgaatttgaccatctttgctaactcctg |
4235563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 143
Target Start/End: Original strand, 28948945 - 28949018
Alignment:
| Q |
70 |
tttcttctttttcttgttcctgttgtgtatgccttggatggtcgatgaaagaaatggcggatcaggccatcttt |
143 |
Q |
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| T |
28948945 |
tttcttcttttccttgttcctgttgtgtatgctttagatggcctgtgaaaaaagtgccggatctgtccatcttt |
28949018 |
T |
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