View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14640_high_12 (Length: 309)

Name: NF14640_high_12
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14640_high_12
NF14640_high_12
[»] chr1 (1 HSPs)
chr1 (4-293)||(35351453-35351742)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 4 - 293
Target Start/End: Original strand, 35351453 - 35351742
Alignment:
Q  4 agcataggaaacaaccaaaccatgaaatgagcgaggaccaggactcaaaccagcagcaatcatatcatacataacttgagaaactccggttgagtcacgg 103  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35351453 agcataggaaacaaccaaaccatgaaacgagcgaggaccaggactcaaaccagcagcaatcatatcatacataacttgagaaactccggttgagtcacgg 35351552  T
Q  104 ttcctagaccggttcatgagctcttccatgaaactgaaccggagactgttctcaagtaaagtgtcatcatctttcacttgcttcttctttctggttcgct 203  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35351553 ttcctagcccggttcatgagctcttccatgaaactgaaccggagactgttctcaagtaaagtgtcatcatctttcacttgcttcttctttctggttcgct 35351652  T
Q  204 tctctggagaagatagcgctgctcgaactggtccggttcgaggagttaagcggtttaatttgaaggggatgtaagtggagccgtaactgt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35351653 tctctggagaagatagcgctgctcgaactggtccggttcgaggagttaagcggtttaatttgaaggggatgtaagtggagccgtaactgt 35351742  T

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