View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14640_high_28 (Length: 241)
Name: NF14640_high_28
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14640_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 42207333 - 42207138
Alignment:
| Q |
7 |
ttatgcatcaccaaaccaagggatacattttctctgcccagaatc-----aacttcatgtgaagtttcaaaattggtgtctactatccaacaagaaagag |
101 |
Q |
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| T |
42207333 |
ttatccatcaccaaaccaagggatacatattctctgcccagaatcgaatcaacttcatgtgaagtttcaacattggtgtctactatccaacaagaaagag |
42207234 |
T |
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| Q |
102 |
tggagtaattagaagagttccccaagctttcatatgctacatgtaattgatcaattttcaaacaagcactcaaagcatactataacagaaaggctg |
197 |
Q |
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| T |
42207233 |
tggagtaattagaagagttccccaagctttcatatgctacatgtaattgatcaattttcaaacaagcactcaaagcataatataacagaaaggctg |
42207138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 42208795 - 42208736
Alignment:
| Q |
85 |
tatccaacaagaaagagtggagtaattagaagagttccccaagctttcatatgctacatg |
144 |
Q |
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| T |
42208795 |
tatccaacaagaaaaagaggaggaattagaagagtttcccaagcttccatatgctacatg |
42208736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 74 - 144
Target Start/End: Complemental strand, 6918228 - 6918158
Alignment:
| Q |
74 |
ttggtgtctactatccaacaagaaagagtggagtaattagaagagttccccaagctttcatatgctacatg |
144 |
Q |
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| T |
6918228 |
ttggtgtctagtatacaacaagaaagagtggaggaattagaagggttccccaagcttccatatgctacatg |
6918158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 28965389 - 28965344
Alignment:
| Q |
146 |
aattgatcaattttcaaacaagcactcaaagcatactataacagaa |
191 |
Q |
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| T |
28965389 |
aattgatcgaatttcaaacaagcattcaaagcatattataacagaa |
28965344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 35088858 - 35088903
Alignment:
| Q |
146 |
aattgatcaattttcaaacaagcactcaaagcatactataacagaa |
191 |
Q |
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| T |
35088858 |
aattgatcgaatttcaaacaagcattcaaagcatattataacagaa |
35088903 |
T |
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