View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14640_high_3 (Length: 542)
Name: NF14640_high_3
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14640_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 12 - 426
Target Start/End: Original strand, 30505002 - 30505408
Alignment:
| Q |
12 |
agcaaaggcaaagtcagatattcataagcttcaccctctaattgatgagttcatccctactcttgaaggagaaaatggaatctgctatactcatccagag |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30505002 |
agcaaaggcaaagtcagatattcataagcttcaccctctaattgatgagttcatccctactcttgaaggagaaaatggaatctgctatactcatccagag |
30505101 |
T |
|
| Q |
112 |
aaactgccaggtatattacatacaatataagctctcaactatttcttgtcttaatttctgatgagtcttataactctaataagtttacattttattttca |
211 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30505102 |
aaactgccaggtatattgcatacaatataagctctca---atttcttgtcttaatttctgatgagtcttataactccaataagtttacattttattttca |
30505198 |
T |
|
| Q |
212 |
ttgaataacatgatcaaaagtggtttacctttagacttcagcaacatgaaaaagaagaaagaagttgttaattttgttgaagtaacattttagtaggaga |
311 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
30505199 |
ttgaataacatgatcagaagtggtttacctttagacttcagcaacatgaaaaagaagaaagaagttg----ttttgttgaagtaacatttttgtaggaga |
30505294 |
T |
|
| Q |
312 |
agatgtggccatttatgctaaccaaatcacattcatccgatctctatcatttttatttcaaataaaaattaacatttcaatattcaagctaataataatg |
411 |
Q |
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|||||| |||||||||||||| ||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
30505295 |
agatgtagccatttatgctaatcaaatcacattaatcc-ttctctatcattttaatttcaaataaaaattaacatttcattattcaggctaataataatg |
30505393 |
T |
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| Q |
412 |
gttaagtggggtaat |
426 |
Q |
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|||||| ||| |||| |
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| T |
30505394 |
gttaagagggataat |
30505408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 30512649 - 30512713
Alignment:
| Q |
28 |
gatattcataagcttcaccctctaattgatgagttcatccctactcttgaaggagaaaatggaat |
92 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | |||||||| |
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| T |
30512649 |
gatattcataagcttcaccctctaattgacgagttcatcccaactcttgaaggatagaatggaat |
30512713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 34832337 - 34832254
Alignment:
| Q |
40 |
cttcaccctctaattgatgagttcatccctactcttgaaggagaaaatggaatctgctatactcatccagagaaactgccaggt |
123 |
Q |
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||||| ||||| |||||||||||||| || || ||||||||||| || |||||||| ||||| |||||||| || || |||||| |
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| T |
34832337 |
cttcatcctcttattgatgagttcataccaacacttgaaggagagaacggaatctgttatacacatccagaaaagctaccaggt |
34832254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 28 - 113
Target Start/End: Original strand, 38886611 - 38886696
Alignment:
| Q |
28 |
gatattcataagcttcaccctctaattgatgagttcatccctactcttgaaggagaaaatggaatctgctatactcatccagagaa |
113 |
Q |
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|||||||| | |||||| ||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
38886611 |
gatattcaaatgcttcatcctttaattgatgaattcatccctactcttgaaggagagaatggaatctgctgtactcatccagagaa |
38886696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 28951029 - 28950946
Alignment:
| Q |
40 |
cttcaccctctaattgatgagttcatccctactcttgaaggagaaaatggaatctgctatactcatccagagaaactgccaggt |
123 |
Q |
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||||| ||||| |||||||||||||| || || ||||||||||| || |||||||| ||||| |||||||| || || |||||| |
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| T |
28951029 |
cttcatcctcttattgatgagttcataccaacacttgaaggagagaacggaatctgttatacacatccagaaaagctaccaggt |
28950946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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