View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14640_high_30 (Length: 226)
Name: NF14640_high_30
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14640_high_30 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 49680653 - 49680424
Alignment:
| Q |
1 |
tgaatttcaaataaaataataaggataaaattagaaaggnnnnnnnngatgatatgctaaacttaaatcttatttgaaataacatttgaaaaataaacta |
100 |
Q |
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| T |
49680653 |
tgaatttcaaataaaataataaggataaaattagaaaggaaaaaaaagatgatatgctaaacttaaatcttatttgaaataacatttgaaaaataaacta |
49680554 |
T |
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| Q |
101 |
taagatagtaaaatagactgttttactcctatgagcttataagccaataagc-----tattggtcttagccaaacatatacccatatgcacacaaactag |
195 |
Q |
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| T |
49680553 |
taagatagtaaaatagactgttttactcctatgaacttgtaag-ctataagctagtttattggtcttagccaaacatatacccaaatgcacacaaactag |
49680455 |
T |
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| Q |
196 |
ttgtattgaatattaaagtttgtacatcacc |
226 |
Q |
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| T |
49680454 |
ttgtattgaatattaaagtttgtacatcacc |
49680424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 49691498 - 49691443
Alignment:
| Q |
171 |
atatacccatatgcacacaaactagttgtattgaatattaaagtttgtacatcacc |
226 |
Q |
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| T |
49691498 |
atatgcccaaatgcacacaaactagttatattgaacattaaagtatgtacatcacc |
49691443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 18532460 - 18532505
Alignment:
| Q |
70 |
ttatttgaaataacatttgaaaaataaactataagatagtaaaata |
115 |
Q |
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| T |
18532460 |
ttatttaaaataacatctgaaaaataagctataagatagtgaaata |
18532505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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