View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14640_low_14 (Length: 304)
Name: NF14640_low_14
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14640_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 25103984 - 25104199
Alignment:
| Q |
1 |
gtgttttgcagaaaagttatgacttgcggtagttttcacaagagatcagaataagcttggatgcagtttaatgcaaagaatttttccaccagaaacattt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25103984 |
gtgttttgcagaaaagttatgacttgcgatagttttcacaagagatcagaataagcttggatgcagtttaatgcaaagaatttttccaccagaaacattt |
25104083 |
T |
|
| Q |
101 |
accaagctagctagatagcatatttgaaatatatttattttcctgtaacctactactaaattctcgtttctatttttatttcatttattatgtatacttt |
200 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25104084 |
acctagctagctagatagcatatttaaaatatatttattttcctgtaacctactactaaattctcgtttctatttttatttcatttattatgtatacttt |
25104183 |
T |
|
| Q |
201 |
aaggggatttatatat |
216 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
25104184 |
aaggggatttatatat |
25104199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 25163077 - 25163292
Alignment:
| Q |
1 |
gtgttttgcagaaaagttatgacttgcggtagttttcacaagagatcagaataagcttggatgcagtttaatgcaaagaatttttccaccagaaacattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25163077 |
gtgttttgcagaaaagttatgacttgcgatagttttcacaagagatcagaataagcttggatgcagtttaatgcaaagaatttttccaccagaaacattt |
25163176 |
T |
|
| Q |
101 |
accaagctagctagatagcatatttgaaatatatttattttcctgtaacctactactaaattctcgtttctatttttatttcatttattatgtatacttt |
200 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25163177 |
acctagctagctagatagcatatttaaaatatatttattttcctgtaacctactactaaattctcgtttctatttttatttcatttattatgtatacttt |
25163276 |
T |
|
| Q |
201 |
aaggggatttatatat |
216 |
Q |
| |
|
|||||||||||||||| |
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| T |
25163277 |
aaggggatttatatat |
25163292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 229 - 291
Target Start/End: Original strand, 8981008 - 8981069
Alignment:
| Q |
229 |
catcacgagtatttcacgaattgtattgaactcatctttcatgacagcagaattgtaacaatt |
291 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| |
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| T |
8981008 |
catcacgagtatttcacgaattgtactgaattcatctttcatga-agcagaattgtaacaatt |
8981069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 574201 - 574139
Alignment:
| Q |
229 |
catcacgagtatttcacgaattgtattgaactcatctttcatgacagcagaattgtaacaatt |
291 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
574201 |
catcacgagtatttcacgaattgtactgaactcatctttcatgacagcagaattgtaacaatt |
574139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 2471898 - 2471837
Alignment:
| Q |
229 |
catcacgagtatttcacgaattgtattgaactcatctttcatgacagcagaattgtaacaatt |
291 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| |
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|
| T |
2471898 |
catcacgagtatttcacgaattgtactgaattcatctttcatga-agcagaattgtaacaatt |
2471837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 229 - 291
Target Start/End: Complemental strand, 27135097 - 27135036
Alignment:
| Q |
229 |
catcacgagtatttcacgaattgtattgaactcatctttcatgacagcagaattgtaacaatt |
291 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| |
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|
| T |
27135097 |
catcacgagtatttcacgaattgtactgaattcatctttcatga-agcagaattgtaacaatt |
27135036 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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