View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14640_low_16 (Length: 298)

Name: NF14640_low_16
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14640_low_16
NF14640_low_16
[»] chr1 (14 HSPs)
chr1 (9-282)||(8106166-8106434)
chr1 (218-276)||(8116552-8116610)
chr1 (59-127)||(33202898-33202967)
chr1 (59-122)||(19637768-19637832)
chr1 (59-122)||(7988446-7988510)
chr1 (56-119)||(10536527-10536591)
chr1 (59-129)||(29415741-29415811)
chr1 (67-121)||(42325561-42325616)
chr1 (65-115)||(18490457-18490507)
chr1 (65-121)||(6427351-6427408)
chr1 (65-122)||(44296496-44296553)
chr1 (47-122)||(11412751-11412827)
chr1 (59-114)||(13436466-13436522)
chr1 (66-121)||(37318414-37318469)
[»] chr7 (10 HSPs)
chr7 (72-130)||(38134414-38134473)
chr7 (59-130)||(4909143-4909215)
chr7 (65-122)||(2525845-2525903)
chr7 (58-111)||(10893863-10893917)
chr7 (72-121)||(12278836-12278886)
chr7 (66-115)||(36314629-36314679)
chr7 (64-116)||(21247736-21247789)
chr7 (68-123)||(8160415-8160471)
chr7 (65-120)||(31808510-31808566)
chr7 (99-131)||(31924417-31924449)
[»] scaffold0022 (1 HSPs)
scaffold0022 (65-130)||(99885-99951)
[»] chr5 (6 HSPs)
chr5 (65-122)||(28296328-28296386)
chr5 (66-130)||(38749565-38749630)
chr5 (89-131)||(36611450-36611492)
chr5 (74-122)||(2577190-2577239)
chr5 (66-122)||(15410450-15410507)
chr5 (71-123)||(19293430-19293483)
[»] chr3 (4 HSPs)
chr3 (59-116)||(20691325-20691383)
chr3 (60-117)||(40150567-40150625)
chr3 (66-130)||(13799496-13799561)
chr3 (66-130)||(21478675-21478740)
[»] chr4 (9 HSPs)
chr4 (72-122)||(18513249-18513300)
chr4 (65-115)||(17734979-17735029)
chr4 (72-130)||(5654599-5654658)
chr4 (72-122)||(14465302-14465353)
chr4 (60-122)||(56049877-56049939)
chr4 (65-130)||(40783949-40784015)
chr4 (70-122)||(20743284-20743337)
chr4 (58-114)||(33950144-33950201)
chr4 (59-123)||(44362665-44362730)
[»] chr2 (9 HSPs)
chr2 (65-119)||(31026698-31026753)
chr2 (72-121)||(18570973-18571023)
chr2 (72-123)||(4229416-4229468)
chr2 (72-122)||(10535767-10535818)
chr2 (87-121)||(16630796-16630830)
chr2 (58-122)||(30298443-30298506)
chr2 (65-110)||(24980537-24980582)
chr2 (72-122)||(37402092-37402144)
chr2 (65-124)||(45000847-45000906)
[»] chr8 (6 HSPs)
chr8 (64-121)||(33382019-33382077)
chr8 (67-116)||(3508058-3508108)
chr8 (66-123)||(11803258-11803316)
chr8 (70-122)||(9936814-9936867)
chr8 (66-130)||(12570736-12570801)
chr8 (59-122)||(12985392-12985456)
[»] scaffold0011 (1 HSPs)
scaffold0011 (64-130)||(240021-240088)
[»] chr6 (6 HSPs)
chr6 (65-123)||(32511667-32511726)
chr6 (65-125)||(14721238-14721299)
chr6 (62-122)||(18612621-18612682)
chr6 (59-122)||(9658879-9658943)
chr6 (59-122)||(32728367-32728431)
chr6 (72-123)||(34446564-34446616)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 8106166 - 8106434
Alignment:
Q  9 gcatagggtctttattgtagtagacgtgttccggtattggacacatttcggtgtctgacaccaacacatatgattacatgaattatgtctttttcttaaa 108  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |        |||||||||||||||||||    
T  8106166 gcatagggtctttattgtagtagacgtgttccgttattggacacatttcggtgtctgacaccaacacatgtaa--------attatgtctttttcttaaa 8106257  T
Q  109 ttattatcggtgtcaacatgtcatagtccatgtctctgtatttagtactctctaacttgaggggggctataattagttcataaattagttagttagttga 208  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8106258 ttattatcggtatcaacatgtcatagtccatgtctctgtatttagtactctctaatttgaggggggctataattagttcataaattagttagttagttga 8106357  T
Q  209 tgttttgttatc---tattaattagttagcaatcattttctgtttttactgttacttgttcccaattctgttgtaag 282  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8106358 tgttttgttatctattattaattagttagcaatcattttctgtttttactgttacttgttcccaattctgctgtaag 8106434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 8116552 - 8116610
Alignment:
Q  218 atctattaattagttagcaatcattttctgtttttactgttacttgttcccaattctgt 276  Q
    ||||||||||| |||||  |||||||||||||||||||||||| |||||||||||||||    
T  8116552 atctattaattcgttagttatcattttctgtttttactgttacatgttcccaattctgt 8116610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 127
Target Start/End: Complemental strand, 33202967 - 33202898
Alignment:
Q  59 gtgtctgacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtcaacat 127  Q
    |||||||||||||| |||||||||||||| || ||||||| |||| | ||||||||||||||||||||||    
T  33202967 gtgtctgacaccaaaacatatgattacattgatttatgtcattttttaaaattattatcggtgtcaacat 33202898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 19637832 - 19637768
Alignment:
Q  59 gtgtctgacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 122  Q
    ||||| |||||| |||||||||||||||| |||| ||||| ||||||||||||||||||||||||    
T  19637832 gtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattatcggtgtc 19637768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 7988446 - 7988510
Alignment:
Q  59 gtgtctgacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 122  Q
    ||||| ||||||||||| ||||||||||| ||||||||||  ||||||||||||||||| |||||    
T  7988446 gtgtccgacaccaacacttatgattacattgaattatgtcactttcttaaattattatcagtgtc 7988510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 10536527 - 10536591
Alignment:
Q  56 tcggtgtctgacaccaacacatatgattac-atgaattatgtctttttcttaaattattatcggt 119  Q
    ||||||||||||||| |||||||||||| |  |||| ||||| || |||||||||||||||||||    
T  10536527 tcggtgtctgacaccgacacatatgattgcgttgaactatgttttgttcttaaattattatcggt 10536591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 29415811 - 29415741
Alignment:
Q  59 gtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtcaacatgt 129  Q
    ||||||||||| ||||||| ||||||   ||||||||||| |||||||||||||||||| || |||||||||    
T  29415811 gtgtctgacac-aacacatgtgattatgctgaattatgtcattttcttaaattattatcagtttcaacatgt 29415741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 42325616 - 42325561
Alignment:
Q  67 caccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgt 121  Q
    |||||||||||||  ||||| ||||||||||| |||||| ||||||||||||||||    
T  42325616 caccaacacatattgttacactgaattatgtcattttctcaaattattatcggtgt 42325561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 18490507 - 18490457
Alignment:
Q  65 gacaccaacacatatgattacatgaattatgtctttttcttaaattattat 115  Q
    |||||||| |||||||||||||||||||||||| |||| | ||||| ||||    
T  18490507 gacaccaagacatatgattacatgaattatgtcattttttaaaattgttat 18490457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 6427408 - 6427351
Alignment:
Q  65 gacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgt 121  Q
    ||||||||||||||| |||||| ||||||||||  |||||| ||||||||| ||||||    
T  6427408 gacaccaacacatataattacattgaattatgtgattttctcaaattattagcggtgt 6427351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 44296496 - 44296553
Alignment:
Q  65 gacaccaacacatatgattacatgaattatgtctttttcttaaattattatcggtgtc 122  Q
    |||||| |||||||||||||  | ||||||||| |||||| ||||||||| |||||||    
T  44296496 gacaccgacacatatgattaactaaattatgtcattttctcaaattattaccggtgtc 44296553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 11412751 - 11412827
Alignment:
Q  47 ggacacatttcggtgtctgacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 122  Q
    |||||||| | ||||||  ||||| |||| |||||| |||| |||||||||| |||||| | |||||||||||||||    
T  11412751 ggacacatgttggtgtccaacaccgacacctatgatcacattgaattatgtcattttctcatattattatcggtgtc 11412827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 13436522 - 13436466
Alignment:
Q  59 gtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattatta 114  Q
    ||||| ||||||||||||||| |||||| ||||||||||  ||| ||||||||||||    
T  13436522 gtgtccgacaccaacacatataattacactgaattatgtgatttccttaaattatta 13436466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 37318469 - 37318414
Alignment:
Q  66 acaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgt 121  Q
    ||||||||||||||||||||| ||||||| ||| |||| ||||||||||||| ||||    
T  37318469 acaccaacacatatgattacattgaattacgtcctttt-ttaaattattatcagtgt 37318414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 38134414 - 38134473
Alignment:
Q  72 acacatatgattacat-gaattatgtctttttcttaaattattatcggtgtcaacatgtc 130  Q
    |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||    
T  38134414 acacatatgattacattgaattatgtcattttctcaaattattatcggtgtcaacatgtc 38134473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 4909215 - 4909143
Alignment:
Q  59 gtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtcaacatgtc 130  Q
    ||||| |||||  ||||||||||||||| ||||||||||  |||||| |||||||||| ||||||||| ||||    
T  4909215 gtgtccgacactgacacatatgattacaatgaattatgtaattttctcaaattattattggtgtcaacctgtc 4909143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 2525845 - 2525903
Alignment:
Q  65 gacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 122  Q
    |||||| ||||||||||||| || |||||||||| ||| || |||||||||||||||||    
T  2525845 gacaccgacacatatgattatattgaattatgtcatttgctcaaattattatcggtgtc 2525903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 10893863 - 10893917
Alignment:
Q  58 ggtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaatta 111  Q
    |||||| ||||||||||||| |||||||| | ||||||||| |||||||||||||    
T  10893863 ggtgtcagacaccaacacatgtgattacattcaattatgtcattttcttaaatta 10893917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 12278886 - 12278836
Alignment:
Q  72 acacatatgattaca-tgaattatgtctttttcttaaattattatcggtgt 121  Q
    |||||||| |||||| ||||||||||| |||||||||||||||||| ||||    
T  12278886 acacatataattacactgaattatgtcattttcttaaattattatcagtgt 12278836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 36314629 - 36314679
Alignment:
Q  66 acaccaacacatatgattaca-tgaattatgtctttttcttaaattattat 115  Q
    ||||||||||||||||||||| |||| |||||| |||||| ||||||||||    
T  36314629 acaccaacacatatgattacattgaaatatgtcattttctcaaattattat 36314679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 21247736 - 21247789
Alignment:
Q  64 tgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatc 116  Q
    ||||||||||||| ||||||||| ||||||| ||| |||||| |||||||||||    
T  21247736 tgacaccaacacacatgattacattgaattacgtcattttctcaaattattatc 21247789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 8160471 - 8160415
Alignment:
Q  68 accaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtca 123  Q
    |||||||||||| |||||| | ||||||||  |||||||||||||||| ||||||||    
T  8160471 accaacacatataattacactaaattatgtaattttcttaaattattagcggtgtca 8160415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 31808510 - 31808566
Alignment:
Q  65 gacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtg 120  Q
    ||||||||||||| |||||||| ||| || |||| |||||| |||||||||||||||    
T  31808510 gacaccaacacatgtgattacattgacttgtgtcattttctcaaattattatcggtg 31808566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 31924449 - 31924417
Alignment:
Q  99 ttttcttaaattattatcggtgtcaacatgtca 131  Q
    ||||||||||||||||||||||||||| |||||    
T  31924449 ttttcttaaattattatcggtgtcaacgtgtca 31924417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 99951 - 99885
Alignment:
Q  65 gacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtcaacatgtc 130  Q
    ||||||||||||||| ||||||| |||||||||  |||||| ||||||||||||||||| |||||||    
T  99951 gacaccaacacatataattacattgaattatgttattttctaaaattattatcggtgtcgacatgtc 99885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 28296386 - 28296328
Alignment:
Q  65 gacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 122  Q
    ||||||||||||||||| ||||| |||||||||| |||||| |||||||||||||||||    
T  28296386 gacaccaacacatatgagtacattgaattatgtcattttctcaaattattatcggtgtc 28296328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 38749565 - 38749630
Alignment:
Q  66 acaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtcaacatgtc 130  Q
    |||||||||||||| ||||||| |||||||||| |||| | ||||||||||||||||| |||||||    
T  38749565 acaccaacacatataattacattgaattatgtcattttttcaaattattatcggtgtcgacatgtc 38749630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 36611492 - 36611450
Alignment:
Q  89 aattatgtctttttcttaaattattatcggtgtcaacatgtca 131  Q
    ||||||||| |||||||||| || |||||||||||||||||||    
T  36611492 aattatgtcattttcttaaactactatcggtgtcaacatgtca 36611450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 2577190 - 2577239
Alignment:
Q  74 acatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 122  Q
    ||||||||||||| | ||||||||| |||||| |||||||||||||||||    
T  2577190 acatatgattacactaaattatgtcattttctcaaattattatcggtgtc 2577239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 15410450 - 15410507
Alignment:
Q  66 acaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 122  Q
    ||||||||||||||||||||| ||||| || |  |||||||||||||||| |||||||    
T  15410450 acaccaacacatatgattacactgaatcatataattttcttaaattattagcggtgtc 15410507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 19293430 - 19293483
Alignment:
Q  71 aacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtca 123  Q
    |||||||||||||||| | ||||||||  ||||||||||||||||| |||||||    
T  19293430 aacacatatgattacacttaattatgttattttcttaaattattattggtgtca 19293483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 20691383 - 20691325
Alignment:
Q  59 gtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatc 116  Q
    |||||||||||| ||||||||||||||| ||||||||||| |||||| |||||||||||    
T  20691383 gtgtctgacaccgacacatatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 40150567 - 40150625
Alignment:
Q  60 tgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcg 117  Q
    |||| |||||| ||||||||||||||| |||||||| || |||||| ||||||||||||    
T  40150567 tgtcagacaccgacacatatgattacattgaattatatcattttctcaaattattatcg 40150625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 13799561 - 13799496
Alignment:
Q  66 acaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtcaacatgtc 130  Q
    ||||| |||||||| |||||| | ||||||||| |||||| ||| |||||||||||||||| ||||    
T  13799561 acaccgacacatattattacacttaattatgtcattttctcaaactattatcggtgtcaacgtgtc 13799496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 21478740 - 21478675
Alignment:
Q  66 acaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtcaacatgtc 130  Q
    ||||||||||||||||||||| ||| ||||||| | || | |||||||||| |||||| |||||||    
T  21478740 acaccaacacatatgattacattgatttatgtcatcttgtgaaattattattggtgtcgacatgtc 21478675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 18513249 - 18513300
Alignment:
Q  72 acacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 122  Q
    |||||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  18513249 acacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 17735029 - 17734979
Alignment:
Q  65 gacaccaacacatatgattacatgaattatgtctttttcttaaattattat 115  Q
    |||||| |||||||||||||||||||||||||| |||| ||||||| ||||    
T  17735029 gacaccgacacatatgattacatgaattatgtcatttttttaaattgttat 17734979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 5654599 - 5654658
Alignment:
Q  72 acacatatgattacat-gaattatgtctttttcttaaattattatcggtgtcaacatgtc 130  Q
    |||| ||||||||||| |||||||||| |||||| ||||||||||| ||||| |||||||    
T  5654599 acacgtatgattacattgaattatgtcattttctcaaattattatcagtgtcgacatgtc 5654658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 14465302 - 14465353
Alignment:
Q  72 acacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 122  Q
    ||||||||||||| || |||||||||| |||||| |||||||||||||||||    
T  14465302 acacatatgattaaattgaattatgtcattttctcaaattattatcggtgtc 14465353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 56049939 - 56049877
Alignment:
Q  60 tgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 122  Q
    ||||||||||| ||||||||||||||| |||| ||||||  ||||| |||||||||||||||||    
T  56049939 tgtctgacaccgacacatatgattacattgaactatgtc-atttctcaaattattatcggtgtc 56049877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 40784015 - 40783949
Alignment:
Q  65 gacaccaacacatatgattac-atgaattatgtctttttcttaaattattatcggtgtcaacatgtc 130  Q
    |||||||||||||||||||||  ||||||||||  || ||| ||||||||||||| ||| |||||||    
T  40784015 gacaccaacacatatgattacgctgaattatgttattatctcaaattattatcggcgtcgacatgtc 40783949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 20743284 - 20743337
Alignment:
Q  70 caacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 122  Q
    |||||| |||||||||| ||||||||||| |||||| ||||||||||| |||||    
T  20743284 caacacctatgattacactgaattatgtcattttctcaaattattatccgtgtc 20743337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 33950201 - 33950144
Alignment:
Q  58 ggtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattatta 114  Q
    ||||||||||||| ||||||||||||||| | ||||||||  |||||| |||||||||    
T  33950201 ggtgtctgacaccgacacatatgattacattaaattatgtgattttctcaaattatta 33950144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 44362730 - 44362665
Alignment:
Q  59 gtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtca 123  Q
    ||||||||||||||||| | |||||||| | ||||||||| |||||| ||| | ||||||||||||    
T  44362730 gtgtctgacaccaacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgtca 44362665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 31026753 - 31026698
Alignment:
Q  65 gacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggt 119  Q
    |||||| ||| |||||||||||| |||||||||| |||||||||||||||||||||    
T  31026753 gacaccgacatatatgattacattgaattatgtcattttcttaaattattatcggt 31026698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Complemental strand, 18571023 - 18570973
Alignment:
Q  72 acacatatgattacat-gaattatgtctttttcttaaattattatcggtgt 121  Q
    |||||||||||||||| |||||||||| |||||| ||||||||||||||||    
T  18571023 acacatatgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 4229416 - 4229468
Alignment:
Q  72 acacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtca 123  Q
    ||||||||||||||| ||||||||||| || |||||||||||||| |||||||    
T  4229416 acacatatgattacactgaattatgtcattctcttaaattattattggtgtca 4229468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 10535767 - 10535818
Alignment:
Q  72 acacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 122  Q
    |||| |||||||||| ||||||||||| |||||| |||||||||||||||||    
T  10535767 acacttatgattacactgaattatgtcattttctcaaattattatcggtgtc 10535818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 121
Target Start/End: Complemental strand, 16630830 - 16630796
Alignment:
Q  87 tgaattatgtctttttcttaaattattatcggtgt 121  Q
    ||||||||||| |||||||||||||||||||||||    
T  16630830 tgaattatgtcattttcttaaattattatcggtgt 16630796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 30298443 - 30298506
Alignment:
Q  58 ggtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 122  Q
    |||||| |||||| ||||||  ||||||| ||||||||||| |||| |||||||||||||||||||    
T  30298443 ggtgtccgacaccgacacat--gattacactgaattatgtcattttattaaattattatcggtgtc 30298506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 24980582 - 24980537
Alignment:
Q  65 gacaccaacacatatgattacatgaattatgtctttttcttaaatt 110  Q
    ||||||||||| ||||||||||||||||||  | ||||||||||||    
T  24980582 gacaccaacacctatgattacatgaattataacattttcttaaatt 24980537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 37402092 - 37402144
Alignment:
Q  72 acacatatgattaca-tgaattatgtc-tttttcttaaattattatcggtgtc 122  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||| |||||||||    
T  37402092 acacatatgattacattgaattatgtcattttttttaaattataatcggtgtc 37402144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 45000847 - 45000906
Alignment:
Q  65 gacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtcaa 124  Q
    |||||| ||||||||||||||| |||||| |||| |||||| ||||| |||||||||||||    
T  45000847 gacaccgacacatatgattacattgaattgtgtcattttctcaaatt-ttatcggtgtcaa 45000906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 33382019 - 33382077
Alignment:
Q  64 tgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgt 121  Q
    ||||||| |||||||| |||||  ||||||||||| |||||||||||||||||||||||    
T  33382019 tgacaccgacacatataattactctgaattatgtcattttcttaaattattatcggtgt 33382077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 3508108 - 3508058
Alignment:
Q  67 caccaacacatatgattaca-tgaattatgtctttttcttaaattattatc 116  Q
    |||||||||||||||||||| ||||||||||  |||||| |||||||||||    
T  3508108 caccaacacatatgattacattgaattatgttattttctcaaattattatc 3508058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 11803316 - 11803258
Alignment:
Q  66 acaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtca 123  Q
    |||||||||||||| |||||| ||||||||||  |||||||||||||||| | ||||||    
T  11803316 acaccaacacatataattacactgaattatgtgattttcttaaattattaacagtgtca 11803258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 9936867 - 9936814
Alignment:
Q  70 caacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 122  Q
    ||||||||||||||| || ||||||| || ||||||||||||||||||| ||||    
T  9936867 caacacatatgattatattgaattatatcattttcttaaattattatcgatgtc 9936814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 12570736 - 12570801
Alignment:
Q  66 acaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtcaacatgtc 130  Q
    ||||||||| |||| |||||| | |||||||  ||||||||||||||||| |||||||||| ||||    
T  12570736 acaccaacatatataattacacttaattatgcgtttttcttaaattattagcggtgtcaacgtgtc 12570801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 12985456 - 12985392
Alignment:
Q  59 gtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 122  Q
    ||||| |||||| ||| ||||||||||| ||||||||||  |||||| |||||||||| ||||||    
T  12985456 gtgtccgacaccgacatatatgattacattgaattatgtgattttctcaaattattataggtgtc 12985392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 240021 - 240088
Alignment:
Q  64 tgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtcaacatgtc 130  Q
    ||||||| ||||||||||||||| |||||||| |  |||||| |||||||||| | ||||||||||||    
T  240021 tgacaccgacacatatgattacattgaattatattattttctcaaattattatagttgtcaacatgtc 240088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 32511667 - 32511726
Alignment:
Q  65 gacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtca 123  Q
    ||||||||||| ||| |||||| ||||||||||  |||||||||||||||| ||||||||    
T  32511667 gacaccaacacttataattacactgaattatgtgattttcttaaattattagcggtgtca 32511726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 14721299 - 14721238
Alignment:
Q  65 gacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtcaac 125  Q
    ||||||||||||||| |||| | ||||||||||  ||||||||||||||||  |||||||||    
T  14721299 gacaccaacacatataattatagtgaattatgtaattttcttaaattattaatggtgtcaac 14721238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 18612682 - 18612621
Alignment:
Q  62 tctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 122  Q
    ||||||||||||||||||||||||| ||||||||| | |||||   ||||||||||| ||||    
T  18612682 tctgacaccaacacatatgattacattgaattatgacattttcaagaattattatcgatgtc 18612621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 9658943 - 9658879
Alignment:
Q  59 gtgtctgacaccaacacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtc 122  Q
    |||||| ||||| ||| |||| |||||| ||||||||||  |||||||||||||||| |||||||    
T  9658943 gtgtctaacaccgacaaatataattacactgaattatgtgattttcttaaattattagcggtgtc 9658879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 32728431 - 32728367
Alignment:
Q  59 gtgtctgacaccaacacatatgattacat-gaattatgtctttttcttaaattattatcggtgtc 122  Q
    |||||||||  |||||||| |  |||||| |||||||||| ||||||||| ||||||||||||||    
T  32728431 gtgtctgacgtcaacacatgtatttacatagaattatgtcattttcttaatttattatcggtgtc 32728367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 34446616 - 34446564
Alignment:
Q  72 acacatatgattaca-tgaattatgtctttttcttaaattattatcggtgtca 123  Q
    |||| |||||||||| ||||||||||| |||||| ||||||||||| ||||||    
T  34446616 acacctatgattacactgaattatgtcattttctcaaattattatccgtgtca 34446564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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