View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14640_low_19 (Length: 293)
Name: NF14640_low_19
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14640_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 23209979 - 23209753
Alignment:
| Q |
11 |
cagagactttgaaatgtcaaactttaggatgcatgaacttagtttttataacataatttatattttaacttaatcatattcctacagagtgtaactaatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23209979 |
cagagactttgaaatgtcaaactttaggatgcatgaacttagtttttataacataaagtatattttaacttaatcatattcctacagagtgtaactaatt |
23209880 |
T |
|
| Q |
111 |
accaggaggtttatgaattttaaagtttttaaatctatgctccctttgttttaaaaaa--taggttcttttaatacacaacaatttcaatgcggaaagaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23209879 |
accaggaggtttatgaattttaaagtttttaaatctatgctccctttgttttaaaaaatttaggttcttttaatacacaagaatttcaatgcggaaagaa |
23209780 |
T |
|
| Q |
209 |
aacatgtatatactattaattgttata |
235 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
23209779 |
aacatgtatatactattaattgttata |
23209753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 23205700 - 23205656
Alignment:
| Q |
226 |
aattgttataatttaatgtagtttgaactaatgggtcaattatgc |
270 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23205700 |
aattgttataatttaatgtagtttgaacttatgggtcaattatgc |
23205656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 28357251 - 28357154
Alignment:
| Q |
16 |
actttgaaatgtcaaactttaggatgcatgaacttagtttttataacataatttatattttaacttaatcatattcctacagagtgtaactaattacc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||| |||| ||||| |||||||| ||||| |||||||| | | | |||||||||||||| |
|
|
| T |
28357251 |
actttgaaatgtcaaactttaggatgcatgaatatgattttcataatataatatatatttttacttagtcatattcatgtataatgtaactaattacc |
28357154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University