View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14640_low_20 (Length: 290)
Name: NF14640_low_20
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14640_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 284
Target Start/End: Original strand, 39371672 - 39371942
Alignment:
| Q |
14 |
catgtagatgtgtgaatgagcttggaaatgagacaaaccctatatcagtattcagtcatgcaacaaatggtaaaggttattattttgctacattgtcaca |
113 |
Q |
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| T |
39371672 |
catgtagatgtgtgaatgagcttggaaatgagacaaaccctatatcagtattcagtcatgcaacaaatggtaaaggttattattttgctacattgtcaca |
39371771 |
T |
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| Q |
114 |
tgcaaagcttggatcaaaattgaagattaatgagtgcaaagcatacctagagagttctccattaaatatttgtaaagttcccaccaatgtgaaccatggg |
213 |
Q |
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| T |
39371772 |
tgcaaagcttggatcaaaattgaagattaatgagtgcaaagcatacctagagagttctccattaaatatttgtaaagttcccaccaatgtgaaccatggg |
39371871 |
T |
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| Q |
214 |
attagtggtgctcctctttcttcttatcgtcttcttgaaaataattttagattgtactctttgccaccttt |
284 |
Q |
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| T |
39371872 |
attagtggtgctcctctttcttcttatcgtcttcttgaaaataattttagattgtactctttgccaccttt |
39371942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 273
Target Start/End: Original strand, 39376265 - 39376517
Alignment:
| Q |
21 |
atgtgtgaatgagcttggaaatgagacaaaccctatatcagtattcagtcatgcaacaaatggtaaaggttattattttgctacattgtcacatgcaaag |
120 |
Q |
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| T |
39376265 |
atgtgtgaatgagcttggatatgagacaggtcctataacagtattgagtcatgtaacagatagtaaaggttattactatgttacattgtcacttgcagag |
39376364 |
T |
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| Q |
121 |
cttggatcaaaattgaagattaatgagtgcaaagcatacctagagagttctccattaaatatttgtaaagttcccaccaatgtgaaccatgggattagtg |
220 |
Q |
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| T |
39376365 |
ttgggatcaaagttgaagattaacgaatgcaaagcatacctagagagttctccattagagacatgtaaagttcccaccgatgtgaaccatggcatcagtg |
39376464 |
T |
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| Q |
221 |
gtgctcctctttcttcttatcgtcttcttgaaaataattttagattgtactct |
273 |
Q |
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| T |
39376465 |
gtgctcctctttcttcttaccgtcttcttgaaaacaattccagattgtactct |
39376517 |
T |
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