View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14640_low_21 (Length: 288)
Name: NF14640_low_21
Description: NF14640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14640_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 4 - 270
Target Start/End: Complemental strand, 25957260 - 25956994
Alignment:
| Q |
4 |
aaacataggcattcttaaatcactgaaaacacttgctgctgataaaactgccatagtaaaattgccggagtccatttttcgcttgaccaaacttgaacga |
103 |
Q |
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| T |
25957260 |
aaacataggcatgcttaaatcactgaaaacacttgctgctgataaaactgccatagtaaaattgccggagtccatttttcgcttgaccaaacttgaacga |
25957161 |
T |
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| Q |
104 |
cttgttttagatagttgcttatatttgagaagactaccaaactgcattggaaaactatgttctttgctggaattatctcttaatcattcaggtttacaag |
203 |
Q |
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| T |
25957160 |
cttgttttagatagttgcttatatttgagaagactaccaaactgcattggaaaactatgttctttgctggaattatctcttaatcattcaggtttacaag |
25957061 |
T |
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| Q |
204 |
aattacacaacactgtcggcttcttgaaaagccttgagaaattaagtttgattgggtgtaaatctct |
270 |
Q |
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| T |
25957060 |
aattacacaacactgtcggcttcttgaaaagccttgagaaattaagtttgattgggtgtaaatctct |
25956994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 4 - 262
Target Start/End: Complemental strand, 25947897 - 25947639
Alignment:
| Q |
4 |
aaacataggcattcttaaatcactgaaaacacttgctgctgataaaactgccatagtaaaattgccggagtccatttttcgcttgaccaaacttgaacga |
103 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
25947897 |
aaacataggcatgcttaaatcactgaaaacccttgctgctgataaaactgccatagtaaagttgcccgagtccatttttcgcttgaccaaacttgaacga |
25947798 |
T |
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| Q |
104 |
cttgttttagatagttgcttatatttgagaagactaccaaactgcattggaaaactatgttctttgctggaattatctcttaatcattcaggtttacaag |
203 |
Q |
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|||||||||||| |||||| | ||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| || | |||||||||||| |
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| T |
25947797 |
cttgttttagatcgttgctcacatttgagaagactaccagactgcattggaaaactatgtgctttgcaagaattatctctttatgaaacaggtttacaag |
25947698 |
T |
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| Q |
204 |
aattacacaacactgtcggcttcttgaaaagccttgagaaattaagtttgattgggtgt |
262 |
Q |
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|||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||| |
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| T |
25947697 |
aattacccaacactgtcggtttcttgaaaaaccttgagaaattaagtttgatggggtgt |
25947639 |
T |
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