View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14640_low_22 (Length: 284)

Name: NF14640_low_22

Description: NF14640

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14640_low_22

[»] chr8 (1 HSPs)

[»] chr2 (2 HSPs)

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 55; E-Value: 1e-22

Query Start/End: Original strand, 169 - 259

Target Start/End: Original strand, 1671233 - 1671323

Alignment:

Q	169	ggaaactcaaaaacccaaacccaacgacggttaagaacgtaaagaaccccataaaaggcaccaacaagaaaacccctgaacacaattcttc	259	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\|\|
T	1671233	ggaaactcaagaacccaaagccaacgacggttatcaacgtaaataaccccataataggcaccaacaagaaaacccctaaacccaactcttc	1671323	T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 38; E-Value: 0.000000000002

Query Start/End: Original strand, 31 - 84

Target Start/End: Complemental strand, 5995997 - 5995944

Alignment:

Q	31	caaaggaatcctaatcttataattgaagaaaggaggacgctgcacacaaacaaa	84	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5995997	caaaggaatccccatcttaaaattgtagaaaggaggacgctgcacacaaacaaa	5995944	T

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Target: chr2; HSP #2

Raw Score: 29; E-Value: 0.0000004

Query Start/End: Original strand, 185 - 249

Target Start/End: Complemental strand, 5995320 - 5995256

Alignment:

Q	185	aaacccaacgacggttaagaacgtaaagaaccccataaaaggcaccaacaagaaaacccctgaac	249	Q
		\|\|\|\|\|\|\|\|\|\| \|\| \|\| \| \|\|\| \|\|\| \|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	5995320	aaacccaacgtcgtttgaaaacataatgaaacccataaatggcaccagcaagaaaacccctgaac	5995256	T

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